spencer411 / FastANI_heatmapLinks
This repository contains R code for building a heatmap and histogram with the output of FastANI
☆18Updated 4 years ago
Alternatives and similar repositories for FastANI_heatmap
Users that are interested in FastANI_heatmap are comparing it to the libraries listed below
Sorting:
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- IslandPath standalone software☆34Updated 2 years ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆37Updated 2 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- ☆20Updated last year
- whole genome MLST analysis☆50Updated 5 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 2 months ago
- Multi-genome synteny block visualization tool☆49Updated last month
- Genomewide Epistasis Analysis on Bacteria☆15Updated 6 months ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆39Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 7 years ago
- ☆60Updated last year
- Bacterial GWAS analysis☆46Updated last month
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆27Updated 7 months ago
- Discover and annotate the virome☆54Updated last month
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 7 months ago
- ☆54Updated 4 months ago
- Graph-based assembly phasing☆90Updated 7 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year