This repository contains R code for building a heatmap and histogram with the output of FastANI
☆18Sep 14, 2021Updated 5 years ago
Alternatives and similar repositories for FastANI_heatmap
Users that are interested in FastANI_heatmap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated 7 months ago
- Download assembly files from NCBI☆12May 9, 2023Updated 3 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆18Dec 29, 2022Updated 3 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- 🤝 Tool for mining KEGG pathways completeness data from eggNOG-mapper annotations☆43Aug 30, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆31Aug 2, 2026Updated 2 months ago
- Lineage-aware Kraken2 refinement for long-read metagenomics☆17Oct 2, 2026Updated 3 weeks ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆20Aug 7, 2026Updated 2 months ago
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 10 years ago
- A taxonomic classifier of plasmids☆32Jul 7, 2021Updated 5 years ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆44Jul 23, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A script for comparing old vs new versions of genome annotations☆24Aug 1, 2023Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆68Jan 19, 2026Updated 9 months ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 4 years ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆71Sep 14, 2026Updated last month
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆21Aug 13, 2026Updated 2 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 4 years ago
- zDB: comparative bacterial genomics made easy☆44Oct 1, 2026Updated 3 weeks ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆96May 3, 2025Updated last year
- Scripts for calculating features and regression of prokaryote OGT☆27Feb 13, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- Pipeline for metabolic annotation of microbial genomes☆154Mar 20, 2025Updated last year
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated last year
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆23Mar 8, 2024Updated 2 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated 6 months ago
- A Xojo/python tool for identification and annotation of transcription factor binding sites in bacterial genomes☆19Aug 8, 2026Updated 2 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆159Sep 2, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 6 years ago
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 4 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆38Jul 21, 2025Updated last year
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated last year
- useful functions for ggplot☆18Oct 9, 2026Updated 3 weeks ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 3 years ago