spencer411 / FastANI_heatmap
This repository contains R code for building a heatmap and histogram with the output of FastANI
☆15Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for FastANI_heatmap
- Genomewide Epistasis Analysis on Bacteria☆13Updated last month
- Quality control plotting for long reads☆10Updated 5 months ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last month
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆24Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆18Updated last year
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 6 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆11Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆23Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆17Updated 7 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- ☆32Updated 3 years ago
- whole genome MLST analysis☆38Updated 5 months ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆19Updated last year
- IslandPath standalone software☆31Updated last year
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆17Updated 4 years ago
- Genome-Genome circle synteny☆23Updated 11 months ago
- Gene-flank analysis tool☆26Updated 6 months ago
- ☆17Updated 2 months ago
- Taxonomic classification of viruses at Order and Family level☆18Updated last year
- Automatic evaluation of HGTs☆22Updated last month
- R package for comparison of synteny conservation at the genome-wide scale.☆13Updated 5 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago