wandreopoulos / deeplasmidLinks
☆20Updated last year
Alternatives and similar repositories for deeplasmid
Users that are interested in deeplasmid are comparing it to the libraries listed below
Sorting:
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- ☆53Updated 3 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- ☆24Updated 6 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- Gene Absence Presence Identification tool.☆27Updated 7 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆38Updated 3 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆48Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated 2 weeks ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆51Updated this week
- Bacterial GWAS analysis☆45Updated 3 months ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- ☆20Updated 2 years ago
- Calculate assocations between genes and traits☆28Updated 7 months ago
- Prophage Activity Estimator☆28Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 8 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- plasmidVerify: plasmid contig verification tool☆14Updated 5 years ago
- Extract metadata from biosamples in NCBI☆16Updated 4 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆15Updated last month