wandreopoulos / deeplasmid
☆17Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for deeplasmid
- EzAAI - High Throughput Prokaryotic AAI Calculator☆36Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 7 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆25Updated 2 weeks ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆24Updated 2 years ago
- Gene Absence Presence Identification tool.☆26Updated last year
- Prophage Activity Estimator☆26Updated 5 months ago
- ☆24Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- Discover and annotate the virome☆31Updated last month
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆19Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆29Updated 2 years ago
- ☆45Updated 7 months ago
- IslandPath standalone software☆31Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆50Updated last week
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 8 months ago
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆17Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆40Updated 3 weeks ago
- post processing of bacterial pangenome gene presence/absence matrices☆52Updated 2 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆51Updated 6 months ago
- ☆24Updated last month
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Bacterial GWAS analysis☆32Updated last month
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13Updated 6 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- ☆28Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated last month