Alternatives and similar repositories for bqtools

Users that are interested in bqtools are comparing it to the libraries listed below

• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆13Updated last year
• noamteyssier / paraseq
  A minimal copy fastq and fasta reader built for parallel support and paired end processing
  ☆42Updated last month
• ArcInstitute / mmr
  A minimap2 implementation with binseq inputs
  ☆17Updated last month
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated last year
• COMBINE-lab / piscem-infer
  ☆14Updated 6 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆55Updated 6 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆66Updated last year
• brentp / spacepile
  convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
  ☆14Updated 2 years ago
• kcleal / superintervals
  Fast interval intersection library
  ☆44Updated 5 months ago
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆95Updated 2 weeks ago
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆61Updated 2 months ago
• nh13 / fqme
  ☆21Updated last month
• nf-core / fastquorum
  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
  ☆26Updated 2 months ago
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆30Updated last week
• wh-xu / Hyper-Gen
  HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors
  ☆30Updated last year
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆34Updated 8 months ago
• COMBINE-lab / pufferfish2
  ☆15Updated 2 years ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆31Updated 5 months ago
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆27Updated 2 weeks ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆53Updated last year
• 38 / pyd4
  The python binding for D4 format
  ☆16Updated 4 years ago
• ArcInstitute / cyto
  A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries
  ☆31Updated last week
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆12Updated last year
• jguhlin / sfasta
  sfasta
  ☆35Updated 9 months ago
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆17Updated last year
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆42Updated 3 months ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated 2 years ago
• natir / vcf2parquet
  Convert vcf in parquet
  ☆29Updated last year
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 3 months ago