Alternatives and similar repositories for bqtools

Users that are interested in bqtools are comparing it to the libraries listed below

• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆78Updated last month
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆59Updated 3 months ago
• noamteyssier / paraseq
  A minimal copy fastq and fasta reader built for parallel support and paired end processing
  ☆37Updated last month
• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆13Updated 10 months ago
• ArcInstitute / mmr
  A minimap2 implementation with binseq inputs
  ☆16Updated 3 weeks ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆54Updated 3 months ago
• wh-xu / Hyper-Gen
  HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors
  ☆29Updated last year
• brentp / spacepile
  convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
  ☆14Updated 2 years ago
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆64Updated last year
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆53Updated this week
• kcleal / superintervals
  Fast interval intersection library
  ☆44Updated 3 months ago
• jguhlin / sfasta
  sfasta
  ☆35Updated 6 months ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆52Updated 11 months ago
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆17Updated last year
• opengenomebrowser / opengenomebrowser
  ☆17Updated last year
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆100Updated last year
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆53Updated 6 months ago
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆25Updated last week
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆46Updated last year
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 4 years ago
• nf-core / fastquorum
  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
  ☆26Updated last month
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆117Updated this week
• COMBINE-lab / piscem-infer
  ☆14Updated 3 months ago
• jdidion / pairwise-alignment
  Catalogue of pairwise alignment algorithms and benchmarks
  ☆24Updated last year
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 5 months ago
• Ebedthan / xgt
  Efficient and fast querying and parsing of GTDB's data
  ☆29Updated 3 months ago
• natir / vcf2parquet
  Convert vcf in parquet
  ☆27Updated 9 months ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated 2 years ago
• baku4 / sigalign
  A Similarity-Guided Alignment Algorithm
  ☆27Updated 5 months ago