A command line utilty for working with BINSEQ files
☆51Sep 23, 2026Updated last month
Alternatives and similar repositories for bqtools
Users that are interested in bqtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A high efficiency binary format for sequencing data☆110Aug 26, 2026Updated 2 months ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 10 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆51Oct 22, 2026Updated last week
- How many distinct k-mers are there in a sequence?☆11Updated this week
- ☆10Jan 20, 2026Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Aug 26, 2026Updated 2 months ago
- A library for efficient nucleotide sequence manipulation using 2-bit encoding☆12Sep 28, 2026Updated last month
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- Implementation of the u-index☆12Jul 19, 2025Updated last year
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 7 months ago
- Fast approximate string searching☆171Updated this week
- Rust bindings to minimap2 library☆114Sep 14, 2026Updated last month
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆31Updated this week
- Fast DNA search and [host] depletion using minimizers☆128Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An efficient CLI to extract sequences from the SRA☆132Jun 12, 2026Updated 4 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated 2 years ago
- ☆28Updated this week
- ☆21Feb 15, 2025Updated last year
- Bit-packed and well-typed biological sequences☆46Sep 22, 2026Updated last month
- a rust library for high throughput binary encoding of genomic sequences☆12Updated this week
- Fast sequence distance estimates☆35Updated this week
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bitpacked sequence trait and implementation☆19Updated this week
- kmer-counter☆19Updated this week
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- An extensible and performant aligner and read mapper☆107Oct 14, 2026Updated 2 weeks ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- gia: Genomic Interval Arithmetic☆69Aug 21, 2024Updated 2 years ago
- Compressed, associative, and exact hash table for k-mers☆11Oct 15, 2026Updated 2 weeks ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Tearing through FASTA/Q sequences☆42Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes fro…☆176Oct 11, 2026Updated 3 weeks ago
- k-mers and the like☆22Oct 18, 2026Updated last week
- Split k-mer analysis – version 2☆109Oct 20, 2026Updated last week
- A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries☆50Oct 14, 2026Updated 2 weeks ago
- Rust bindings to Intelligent Storage Acceleration Library (ISA-L)☆15Feb 2, 2025Updated last year
- A SIMD-accelerated library to compute random minimizers☆49Updated this week
- ☆18Oct 12, 2026Updated 2 weeks ago