ArcInstitute / bqtoolsLinks
A command line utilty for working with BINSEQ files
☆35Updated this week
Alternatives and similar repositories for bqtools
Users that are interested in bqtools are comparing it to the libraries listed below
Sorting:
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆40Updated 3 weeks ago
- A high efficiency binary format for sequencing data☆94Updated last week
- Hierarchical binned indexed data store for on-disk genomic data.☆13Updated last year
- A minimap2 implementation with binseq inputs☆17Updated last month
- bedtools-like functionality for interval sets in rust☆55Updated 5 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- gia: Genomic Interval Arithmetic☆66Updated last year
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- a minimal, scriptable genome browser for python☆53Updated last year
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆61Updated last month
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Updated last year
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 7 months ago
- ☆14Updated 5 months ago
- Fast interval intersection library☆44Updated 5 months ago
- An efficient CLI to extract sequences from the SRA☆120Updated 2 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- Convert vcf in parquet☆29Updated last year
- Nail is an Alignment Inference tooL☆55Updated this week
- ☆15Updated 2 years ago
- sfasta☆35Updated 9 months ago
- Fast sequencing data quality metrics☆31Updated 4 months ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated last month
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 4 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Updated last month
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 8 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆20Updated 11 months ago
- Rust wrapper for the next generation (still currently in C++)☆29Updated 6 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last month