A command line utilty for working with BINSEQ files
☆39Jun 26, 2026Updated last week
Alternatives and similar repositories for bqtools
Users that are interested in bqtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A high efficiency binary format for sequencing data☆103Jun 26, 2026Updated last week
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21May 31, 2026Updated last month
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆43May 21, 2026Updated last month
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 6 months ago
- A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries☆46Jun 23, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- A SIMD-accelerated library to compute random minimizers☆45Apr 6, 2026Updated 2 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 3 months ago
- ☆52Sep 20, 2022Updated 3 years ago
- Rust bindings to minimap2 library☆113May 3, 2026Updated last month
- parallel differential expression for single-cell perturbation sequencing☆25Updated this week
- Fasten toolkit, for streaming operations on fastq files☆82Oct 24, 2025Updated 8 months ago
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- quickly filter fastq files by matching sequences to a set of regex patterns☆59Apr 18, 2026Updated 2 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆132Apr 17, 2026Updated 2 months ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 5 years ago
- Bitpacked sequence trait and implementation☆18Feb 27, 2026Updated 4 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- Instant, beautiful, pick-and-mix slide decks☆13Feb 21, 2016Updated 10 years ago
- PtrHash minimal perfect hash function☆97Sep 2, 2025Updated 10 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated last year
- Fast FASTX parsing and k-mer methods in Rust☆212Jun 22, 2026Updated last week
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆24May 21, 2026Updated last month
- Single-Cell RNA-seq pseudo-aligner☆52May 6, 2024Updated 2 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆32Aug 26, 2024Updated last year
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- k-mers and the like☆23Updated this week
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Nov 6, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast approximate string searching☆153Jun 20, 2026Updated last week
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆44Sep 29, 2025Updated 9 months ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆64Mar 25, 2026Updated 3 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated last month
- ☆15May 22, 2026Updated last month
- An algorithm for recovering haplotypes from metagenomes☆30Jun 29, 2021Updated 5 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago