Alternatives and similar repositories for bqtools

Users that are interested in bqtools are comparing it to the libraries listed below

• noamteyssier / paraseq
  A minimal copy fastq and fasta reader built for parallel support and paired end processing
  ☆38Updated 2 months ago
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆83Updated last week
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆61Updated last week
• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆13Updated 10 months ago
• ArcInstitute / mmr
  A minimap2 implementation with binseq inputs
  ☆17Updated last month
• brentp / spacepile
  convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
  ☆14Updated 2 years ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆55Updated 4 months ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆54Updated this week
• wh-xu / Hyper-Gen
  HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors
  ☆29Updated last year
• Benson-Genomics-Lab / IRF
  Inverted Repeats Finder: a program to analyze DNA and RNA sequences
  ☆20Updated 9 months ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆53Updated 11 months ago
• jguhlin / sfasta
  sfasta
  ☆35Updated 7 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 6 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆100Updated last year
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated 2 years ago
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆46Updated last year
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆63Updated last year
• biodatageeks / polars-bio
  Blazing-Fast Bioinformatic Operations on Python DataFrames
  ☆123Updated this week
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆53Updated 6 months ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆27Updated 2 weeks ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated last week
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆56Updated 2 years ago
• nf-core / fastquorum
  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
  ☆26Updated last week
• dwpeng / filterx
  process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED
  ☆21Updated 3 months ago
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆17Updated last year
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆31Updated 3 months ago
• kcleal / superintervals
  Fast interval intersection library
  ☆44Updated 3 months ago
• rvaser / sword
  SWORD - a highly efficient protein database search
  ☆26Updated last year
• fulcrumgenomics / fgpyo
  Quality of life improvements for Bioinformatics in Python.
  ☆31Updated last week