Alternatives and similar repositories for bamscope

Users that are interested in bamscope are comparing it to the libraries listed below

• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 10 months ago
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆12Updated this week
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated last year
• mchaisso / mcutils
  ☆12Updated 4 months ago
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 3 years ago
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated 11 months ago
• VCCRI / dv-trio
  dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…
  ☆11Updated 4 years ago
• jts / mbtools
  ☆14Updated last year
• jbelyeu / unfazed
  Unfazed by genomic variant phasing
  ☆27Updated last year
• AndreaGuarracino / chain2paf
  convert CHAIN format to PAF format
  ☆14Updated 8 months ago
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆14Updated 2 weeks ago
• Gaius-Augustus / clamsa
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆13Updated 9 months ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated 4 months ago
• mcfrith / dnarrange
  ☆16Updated 7 months ago
• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆14Updated 7 months ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• luntergroup / bamsplit
  Split a BAM file by haplotype support
  ☆16Updated 7 years ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆32Updated 7 months ago
• nh13 / fqme
  ☆22Updated 8 months ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated 2 years ago
• Magdoll / CoSA
  Coronavirus (SARS-Cov-2) sequencing analysis
  ☆10Updated 3 years ago
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 4 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 5 years ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated last year
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated last month
• gui11aume / mmp
  MEM mapper prototype
  ☆13Updated 4 years ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆27Updated last year
• bahlolab / superSTR
  A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.
  ☆18Updated last month
• ban-m / jtk
  JTK -- a regional diploid genome assembler
  ☆25Updated 10 months ago
• GP2code / CNV-Finder
  Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.
  ☆11Updated 2 months ago