jslfree080 / bamscopeLinks
A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)
☆10Updated last year
Alternatives and similar repositories for bamscope
Users that are interested in bamscope are comparing it to the libraries listed below
Sorting:
- Hidden Markov Model based Copy number caller☆20Updated 9 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 10 months ago
- Variant call adjudication☆16Updated last year
- ☆9Updated 3 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- CLI to automate Nextflow pipeline testing☆12Updated last month
- ☆22Updated 8 months ago
- Detects human contamination in bam files☆16Updated 4 years ago
- ☆14Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- ☆12Updated 3 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 6 months ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 8 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 3 weeks ago
- ☆16Updated 6 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- k-mer similarity analysis pipeline☆22Updated last month
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 2 weeks ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 months ago
- MEM mapper prototype☆13Updated 4 years ago
- convert CHAIN format to PAF format☆14Updated 7 months ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 6 months ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- drunk on perbase pileups and lua expressions☆19Updated 2 months ago
- ☆13Updated 3 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated 10 months ago