Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.
☆13Jul 28, 2026Updated 2 weeks ago
Alternatives and similar repositories for variantcatalogue
Users that are interested in variantcatalogue are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Jul 28, 2026Updated 2 weeks ago
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Aug 3, 2026Updated last week
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆41Jul 27, 2026Updated 2 weeks ago
- Converts bam or cram files to fastq format and does quality control.☆32Jul 24, 2026Updated 2 weeks ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆35Jul 28, 2026Updated 2 weeks ago
- Torrent Mapping Alignment Program☆20Mar 2, 2013Updated 13 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Jul 28, 2026Updated 2 weeks ago
- Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.☆19Jul 28, 2026Updated 2 weeks ago
- An analysis pipeline for Nanostring nCounter expression data.☆18Jul 28, 2026Updated 2 weeks ago
- Nascent Transcription Processing Pipeline☆24Jul 27, 2026Updated 2 weeks ago
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆18Jul 28, 2026Updated 2 weeks ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆68Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tools for evolutionary forecasting☆14Jun 19, 2026Updated last month
- ☆15May 22, 2026Updated 2 months ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- ☆12Jan 11, 2024Updated 2 years ago
- ☆20Sep 20, 2021Updated 4 years ago
- Workflow management with Nextflow and nf-core☆32Jan 21, 2025Updated last year
- gatk4 RNA variant calling pipeline☆61Jul 28, 2026Updated 2 weeks ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆25Jul 28, 2026Updated 2 weeks ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆111Jul 27, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A pipeline to investigate horizontal gene transfer from NGS data☆27Jul 27, 2026Updated 2 weeks ago
- The Poseidon Community Archive (PCA). Download from here: https://server.poseidon-adna.org/explorer/community-archive NOT through the G…☆17Jul 17, 2026Updated 3 weeks ago
- BioPerl scripts and utilities☆11Sep 2, 2025Updated 11 months ago
- This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis…☆17Jul 17, 2026Updated 3 weeks ago
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆25Jul 28, 2026Updated 2 weeks ago
- ☆11Dec 19, 2024Updated last year
- A Rust implementation of SSHash☆19Updated this week
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆13Aug 4, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- An aDNA aware short-read mapper☆22Apr 22, 2026Updated 3 months ago
- Software to call ROHs☆20Updated this week
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆54Updated this week
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆17Aug 6, 2024Updated 2 years ago
- Training ensemble machine learning classifiers, with flexible templates for repeated cross-validation and parameter tuning☆12Dec 12, 2020Updated 5 years ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36Updated this week
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Jul 21, 2026Updated 3 weeks ago