Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.
☆13Jun 3, 2025Updated 9 months ago
Alternatives and similar repositories for variantcatalogue
Users that are interested in variantcatalogue are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Updated this week
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Nov 20, 2025Updated 4 months ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Nov 20, 2025Updated 4 months ago
- Converts bam or cram files to fastq format and does quality control.☆32Jan 22, 2026Updated 2 months ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆33Jun 3, 2025Updated 9 months ago
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Jun 3, 2025Updated 9 months ago
- gatk4 RNA variant calling pipeline☆59Mar 9, 2026Updated 2 weeks ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Nov 20, 2025Updated 4 months ago
- This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis…☆15Feb 5, 2026Updated last month
- ☆21Feb 12, 2026Updated last month
- An analysis pipeline for Nanostring nCounter expression data.☆18Jan 30, 2026Updated last month
- Nascent Transcription Processing Pipeline☆22Nov 20, 2025Updated 4 months ago
- Compare the quality of multiple genomes, along with their annotations.☆20Updated this week
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆18Jun 3, 2025Updated 9 months ago
- ☆15Mar 11, 2026Updated last week
- ☆19Sep 20, 2021Updated 4 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Tools for evolutionary forecasting☆14Feb 9, 2026Updated last month
- Software to call ROHs☆18Oct 15, 2025Updated 5 months ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆23Jan 15, 2026Updated 2 months ago
- Workflow management with Nextflow and nf-core☆30Jan 21, 2025Updated last year
- ☆12Jan 11, 2024Updated 2 years ago
- The Poseidon Community Archive (PCA). Download from here: https://server.poseidon-adna.org/explorer/community-archive NOT through the G…☆13Updated this week
- Analysis of Chromosome Conformation Capture data (Hi-C)☆110Mar 6, 2026Updated 2 weeks ago
- A pipeline to investigate horizontal gene transfer from NGS data☆26Nov 20, 2025Updated 4 months ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 6 months ago
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆25Jun 26, 2025Updated 8 months ago
- BioPerl scripts and utilities☆11Sep 2, 2025Updated 6 months ago
- Nextflow Tower CLI tool☆53Updated this week
- ☆11Dec 19, 2024Updated last year
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated last year
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆49Nov 20, 2025Updated 4 months ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- An aDNA aware short-read mapper☆22Mar 6, 2026Updated 2 weeks ago
- CZID (formerly IDseq) infectious disease command-line interface☆21Jul 22, 2024Updated last year
- Training ensemble machine learning classifiers, with flexible templates for repeated cross-validation and parameter tuning☆12Dec 12, 2020Updated 5 years ago
- Sketch phylogenetic trees and networks☆24Feb 5, 2026Updated last month