Alternatives and similar repositories for fastq-rs:

Users that are interested in fastq-rs are comparing it to the libraries listed below

• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆74Updated 3 weeks ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 7 months ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆27Updated this week
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆77Updated last month
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆75Updated last week
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆86Updated 9 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated 8 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆61Updated 6 months ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆87Updated last month
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆66Updated 6 months ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated last week
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆22Updated 2 years ago
• COMBINE-lab / terminus
  ☆57Updated 2 years ago
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆161Updated last week
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆30Updated this week
• luizirber / nthash
  ntHash implementation in Rust
  ☆35Updated 7 months ago
• ostnam / rust-wfa
  ☆11Updated 2 years ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated 9 months ago
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆128Updated last week
• luizirber / niffler
  Simple and transparent support for compressed files.
  ☆76Updated last week
• jguhlin / sfasta
  sfasta
  ☆35Updated last month
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆33Updated 3 months ago
• onecodex / finch-rs
  A genomic minhashing implementation in Rust
  ☆93Updated last year
• brentp / vcfexpress
  expressions on VCFs
  ☆68Updated this week
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 3 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆49Updated 6 months ago
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆34Updated 3 weeks ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆125Updated last month
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆81Updated last month