Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
☆21Aug 26, 2026Updated last week
Alternatives and similar repositories for simd-sketch
Users that are interested in simd-sketch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 5 months ago
- Bitpacked sequence trait and implementation☆19Aug 19, 2026Updated 2 weeks ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated 2 weeks ago
- kmer-counter based on kache-hash☆16Updated this week
- A SIMD-accelerated library to compute random minimizers☆46Aug 26, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆21Feb 15, 2025Updated last year
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆15Apr 1, 2026Updated 5 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 9 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆49Aug 19, 2026Updated 2 weeks ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated last month
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- An efficient CLI to extract sequences from the SRA☆127Jun 12, 2026Updated 2 months ago
- A command line utilty for working with BINSEQ files☆39Aug 25, 2026Updated last week
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Jul 24, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A new high-resolution long-read metagenome assembler for even noisy reads☆167Jul 3, 2026Updated 2 months ago
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 6 months ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 5 years ago
- gemsparcl 💎✨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic life☆17Jun 16, 2026Updated 2 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last month
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An extensible and performant aligner and read mapper☆103Jul 27, 2026Updated last month
- Real-time species-typing visualisation for nanopore data.☆12Apr 11, 2023Updated 3 years ago
- Rust bindings to minimap2 library☆113May 3, 2026Updated 3 months ago
- Fast approximate string searching☆165Aug 11, 2026Updated 3 weeks ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- Ultra-rapid detection of viral variants directly from sequencing data☆47Updated this week
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆89Jan 25, 2024Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆71Apr 25, 2026Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated last month
- The fastest priority queue☆33Aug 26, 2026Updated last week
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- k-mers and the like☆23Updated this week
- Maturin Starter Project w/PyO3 & Poetry☆13Aug 28, 2022Updated 4 years ago
- ☆17Apr 6, 2023Updated 3 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Aug 21, 2026Updated last week