Alternatives and similar repositories for simd-sketch

Users that are interested in simd-sketch are comparing it to the libraries listed below

• TravisWheelerLab / sufr
  Parallel Construction of Suffix Arrays in Rust
  ☆26Updated 8 months ago
• bacpop / sketchlib.rust
  Fast sequence distance estimates
  ☆25Updated 2 weeks ago
• rust-seq / packed-seq
  Bitpacked sequence trait and implementation
  ☆16Updated last month
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆34Updated this week
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• Daniel-Liu-c0deb0t / ANTISEQUENCE
  Rust library for processing sequencing reads.
  ☆25Updated last year
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆33Updated 2 years ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆46Updated last year
• oxli-bio / oxli
  k-mers and the like
  ☆22Updated last week
• noamteyssier / paraseq
  A minimal copy fastq and fasta reader built for parallel support and paired end processing
  ☆39Updated 3 weeks ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆16Updated last year
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆28Updated 8 months ago
• iqbal-lab-org / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆20Updated last year
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆18Updated 2 years ago
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated 6 months ago
• St4NNi / jam-rs
  Just another minhash implementation.
  ☆12Updated 4 months ago
• chfi / waragraph
  ☆29Updated last year
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆91Updated last month
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆39Updated 5 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆57Updated last month
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 4 years ago
• RagnarGrootKoerkamp / sassy
  Fast approximate string searching
  ☆96Updated last week
• natir / biotest
  Generate random test data for bioinformatics
  ☆27Updated last year
• COMBINE-lab / mim
  A small, auxiliary index to massively improve parallel fastq parsing
  ☆29Updated last month
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated last year
• RagnarGrootKoerkamp / rust-phylogeny
  Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)
  ☆15Updated 8 months ago