Alternatives and similar repositories for DeChat

Users that are interested in DeChat are comparing it to the libraries listed below

• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆50Updated 3 years ago
• human-pangenomics / hprc-tutorials
  ☆19Updated last year
• at-cg / RAFT
  ☆30Updated last year
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆49Updated 3 weeks ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆36Updated last month
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 8 months ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆38Updated 3 weeks ago
• agshumate / LiftoffTools
  ☆29Updated 2 years ago
• maickrau / ribotin
  ☆38Updated last week
• warp9seq / minimod
  A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
  ☆40Updated 2 weeks ago
• bcgsc / goldrush
  Linear-time de novo Long Read Assembler
  ☆41Updated 2 months ago
• asylvz / SVarp
  Phased structural variant discovery in pangenomes
  ☆39Updated last month
• ablab / VerityMap
  ☆39Updated 2 years ago
• hitbc / gcSV
  ☆21Updated 10 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆31Updated 6 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆31Updated 4 years ago
• Markusjsommer / TD2
  TD2
  ☆29Updated last month
• LHG-GG / I002C
  Telomere-to-Telomere diploid Indian Genome
  ☆14Updated 5 months ago
• mrvollger / NucFreq
  ☆38Updated 3 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆28Updated last year
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆39Updated 3 months ago
• lh3 / TRF-mod
  Tandem Repeats Finder: a program to analyze DNA sequences
  ☆18Updated 5 months ago
• fawaz-dabbaghieh / bubble_gun
  ☆41Updated 3 weeks ago
• dvdylus / read2tree
  ☆20Updated 3 years ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆30Updated last year
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆33Updated 4 years ago
• TravisWheelerLab / ULTRA
  ULTRA Locates Tandemly Repetitive Areas
  ☆40Updated 2 months ago
• tprodanov / locityper
  Targeted genotyper for complex polymorphic genes
  ☆31Updated 3 weeks ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆30Updated last month