LuoGroup2023 / DeChatLinks
Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat
☆25Updated 9 months ago
Alternatives and similar repositories for DeChat
Users that are interested in DeChat are comparing it to the libraries listed below
Sorting:
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated last month
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆53Updated last month
- ☆19Updated last year
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆16Updated 3 weeks ago
- Improved long-read assembly by preserving contained reads☆30Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 9 months ago
- Linear-time de novo Long Read Assembler☆41Updated 3 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Updated 4 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆60Updated last week
- ☆38Updated 4 months ago
- ☆38Updated last month
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Updated 11 months ago
- ☆22Updated 3 weeks ago
- ☆39Updated 2 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Kmer Analysis of Pileups for Genotyping☆35Updated last week
- Consensus genome annotation using OMA☆31Updated 3 weeks ago
- ☆29Updated 2 years ago
- Phased structural variant discovery in pangenomes☆39Updated 2 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Updated last month
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- Centromere mapping and annotation pipeline☆21Updated 3 weeks ago
- Differential k-mer analysis☆39Updated 2 years ago
- Pangenome Mutation-Annotated Networks☆35Updated 3 weeks ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- ☆20Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆26Updated this week
- ULTRA Locates Tandemly Repetitive Areas☆41Updated 3 months ago