LuoGroup2023 / DeChatLinks
Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat
☆24Updated 6 months ago
Alternatives and similar repositories for DeChat
Users that are interested in DeChat are comparing it to the libraries listed below
Sorting:
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- ☆18Updated last year
- ☆28Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆41Updated last month
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 5 months ago
- Linear-time de novo Long Read Assembler☆41Updated last month
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆39Updated this week
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last week
- ☆29Updated 2 years ago
- Consensus genome annotation using OMA☆27Updated 5 months ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆16Updated last month
- ☆36Updated 3 months ago
- ☆38Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- a python package for finding tandem repeats from genomic sequences☆29Updated 8 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆23Updated 2 weeks ago
- SV calling for diploid assemblies☆29Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 8 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
- ☆45Updated last week
- ☆21Updated 8 months ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Statistics and analysis for variation graphs☆46Updated 11 months ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆17Updated 3 months ago
- ☆38Updated last month
- A tool for de novo clustering of long transcriptomic reads☆15Updated 3 years ago
- ☆20Updated 3 years ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year