Alternatives and similar repositories for DeChat:

Users that are interested in DeChat are comparing it to the libraries listed below

• LuoGroup2023 / PanTax
  Strain-level taxonomic classification of metagenomic data using pangenome graphs
  ☆23Updated 3 months ago
• at-cg / RAFT
  ☆22Updated 6 months ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆34Updated this week
• human-pangenomics / hprc-tutorials
  ☆14Updated 10 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated 8 months ago
• Gaius-Augustus / GUSHR
  Generating UTRs from SHort Reads
  ☆11Updated 4 years ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆29Updated 2 months ago
• lh3 / TRF-mod
  Tandem Repeats Finder: a program to analyze DNA sequences
  ☆14Updated 2 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆21Updated 6 months ago
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆14Updated 5 months ago
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆31Updated last month
• ERGA-consortium / pipelines
  ☆16Updated last week
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆17Updated 3 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆26Updated 5 months ago
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆17Updated this week
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 2 months ago
• marbl / training
  Genome Assembly 102
  ☆14Updated last month
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 8 months ago
• agshumate / LiftoffTools
  ☆25Updated last year
• merlyescalona / yagcloser
  YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
  ☆12Updated 2 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 2 years ago
• pierrepeterlongo / back_to_sequences
  ☆41Updated this week
• dvdylus / read2tree
  ☆20Updated 2 years ago
• nextgenusfs / redmask
  Genome assembly soft-masking using Red (REpeat Detector)
  ☆16Updated 6 years ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 3 months ago
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 4 months ago