phiweger / uvLinks
Finding prophage regions in bacterial genomes using brute force
☆21Updated 2 years ago
Alternatives and similar repositories for uv
Users that are interested in uv are comparing it to the libraries listed below
Sorting:
- software to identify primers that can distinguish genomes☆20Updated 8 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 10 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆26Updated last month
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- ☆17Updated last year
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Read contamination removal☆25Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- Visualize microbial evolution at the SNP level!☆15Updated last month
- Neptune: Genomic Signature Discovery☆20Updated 10 months ago
- Organism-specific interpretation of AMR genotypes☆14Updated last year
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Updated 9 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 7 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 5 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Genome size estimation from long read overlaps☆61Updated 2 weeks ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated 10 months ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆20Updated last year
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Updated 4 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆32Updated last month
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 8 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago