phiweger / uvLinks
Finding prophage regions in bacterial genomes using brute force
☆22Updated 3 years ago
Alternatives and similar repositories for uv
Users that are interested in uv are comparing it to the libraries listed below
Sorting:
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last year
- Neptune: Genomic Signature Discovery☆21Updated last year
- Read contamination removal☆25Updated 2 years ago
- frame-shift correction for long-read (meta)genomics☆33Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 3 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 11 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 3 years ago
- ☆18Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Updated 3 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆22Updated last week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆13Updated last year
- Organism-specific interpretation of AMR genotypes☆15Updated last year
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆22Updated last year
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Updated last year
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆17Updated last month
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Updated this week
- Remove human reads from a sequencing run☆47Updated last month
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Updated last year
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Updated 2 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆15Updated 8 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆34Updated 3 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago