bluenote-1577 / deviderLinks
Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
☆31Updated 3 weeks ago
Alternatives and similar repositories for devider
Users that are interested in devider are comparing it to the libraries listed below
Sorting:
- Extracts subgraphs or components from a graph in GFA format☆25Updated 11 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- ☆45Updated last week
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 4 months ago
- A novel method for sequence similarity estimation☆28Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Correcting errors in noisy long reads using variation graphs☆50Updated 2 years ago
- Genome size estimation from long read overlaps☆62Updated last month
- General purpose utility related to GAF files☆29Updated last month
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated last week
- Differential k-mer analysis☆37Updated last year
- Basecalling configuration prediction through FASTQ files☆31Updated 5 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- Variant call verification☆16Updated 5 months ago
- convert variation graph alignments to coverage maps over nodes☆26Updated this week
- software to identify primers that can distinguish genomes☆20Updated 9 months ago
- Fast and exact gap-affine partial order alignment☆55Updated 2 weeks ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Prefix-renaming FASTA records really fast.☆16Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 3 months ago
- Sketch phylogenetic trees and networks☆23Updated 2 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- ☆28Updated last year
- ☆40Updated 2 months ago
- ☆25Updated 2 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- ☆19Updated 8 months ago
- Long-read aligner to pangenome graphs☆27Updated last year