Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
☆41Sep 29, 2025Updated 6 months ago
Alternatives and similar repositories for devider
Users that are interested in devider are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Strain-level haplotyping for metagenomes with short or long-reads.☆65Apr 10, 2025Updated last year
- JTK -- a regional diploid genome assembler☆26Oct 20, 2024Updated last year
- bioinformatics toolkit in rust☆101Feb 15, 2026Updated last month
- ☆19Feb 15, 2025Updated last year
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆46Nov 21, 2025Updated 4 months ago
- ☆49Mar 19, 2023Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆51Nov 17, 2022Updated 3 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Rust bindings to minimap2 library☆109Mar 30, 2026Updated last week
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 8 months ago
- General purpose utility related to GAF files☆29Apr 2, 2026Updated last week
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆18Dec 26, 2025Updated 3 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆31Mar 6, 2026Updated last month
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 4 months ago
- Genome size estimation from long read overlaps☆81Mar 9, 2026Updated last month
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago
- Graph-based assembly phasing☆93Nov 25, 2025Updated 4 months ago
- ☆23Sep 9, 2025Updated 7 months ago
- ☆32Feb 14, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- implicit pangenome graph☆98Updated this week
- vcfdist: Accurately benchmarking phased variant calls☆85Feb 23, 2026Updated last month
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 10 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- a short-read polishing tool for long-read assemblies☆211Sep 19, 2025Updated 6 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆50Mar 26, 2026Updated 2 weeks ago
- ☆16Apr 1, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Split k-mer analysis – version 2☆105Updated this week
- A complete diploid human genome☆145Mar 27, 2026Updated 2 weeks ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 4 months ago
- Tandem repeat genotyping with long reads☆36Sep 23, 2025Updated 6 months ago
- ☆62Sep 15, 2025Updated 6 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Apr 23, 2025Updated 11 months ago
- Transformer-based sequence correction method for genome assembly polishing☆100Mar 11, 2025Updated last year