bluenote-1577 / deviderLinks
Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
☆28Updated last week
Alternatives and similar repositories for devider
Users that are interested in devider are comparing it to the libraries listed below
Sorting:
- Extracts subgraphs or components from a graph in GFA format☆24Updated 10 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 3 months ago
- Differential k-mer analysis☆37Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Genome size estimation from long read overlaps☆61Updated 2 weeks ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆23Updated last week
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 5 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- ☆45Updated 2 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆26Updated last month
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 4 months ago
- Prefix-renaming FASTA records really fast.☆16Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 2 months ago
- A novel method for sequence similarity estimation☆28Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Better Alignments with Translated HMMER☆22Updated 2 weeks ago
- General purpose utility related to GAF files☆29Updated 3 weeks ago
- Variant call verification☆16Updated 4 months ago
- software to identify primers that can distinguish genomes☆20Updated 8 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated last month
- ☆25Updated 2 months ago
- Fast and exact gap-affine partial order alignment☆54Updated 3 weeks ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 10 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆37Updated 3 weeks ago
- Basecalling configuration prediction through FASTQ files☆23Updated 4 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆43Updated last month
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 4 months ago