stjude-rust-labs / ngs
Command line utility for working with next-generation sequencing files.
☆33Updated 2 months ago
Alternatives and similar repositories for ngs:
Users that are interested in ngs are comparing it to the libraries listed below
- Creating alignment plots from bam files☆56Updated this week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆32Updated last week
- bedtools-like functionality for interval sets in rust☆49Updated 4 months ago
- an API for intersections of genomic data☆74Updated this week
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated 2 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆16Updated this week
- A FASTA/FASTQ format parser library☆20Updated 10 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated last year
- vembrane filters VCF records using python expressions☆57Updated 3 months ago
- Alignment-based gene expression quantification☆27Updated 7 months ago
- Fast FASTQ sample demultiplexing in Rust.☆58Updated last month
- gia: Genomic Interval Arithmetic☆58Updated 4 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 3 months ago
- expressions on VCFs☆66Updated 3 months ago
- Fast and exact gap-affine partial order alignment☆41Updated last month
- Tumour-only somatic mutation calling using long reads☆25Updated 2 months ago
- bioinformatics toolkit in rust☆86Updated 8 months ago
- Generate random test data for bioinformatics☆25Updated 7 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- ☆19Updated 2 weeks ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆24Updated 3 weeks ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- a lexicographically-based GTF/GFF sorter☆29Updated 4 months ago
- PGR-TK: Pangenome Research Tool Kit☆12Updated last month
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 6 months ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆42Updated 3 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 2 months ago
- Rust wrapper for the next generation (still currently in C++)☆22Updated this week
- Iterate over minimizers of a DNA sequence☆27Updated 6 months ago