Command line utility for working with next-generation sequencing files.
☆39Jun 24, 2025Updated last year
Alternatives and similar repositories for ngs
Users that are interested in ngs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Command line utility for manipulating FASTQ files☆99Apr 14, 2026Updated 3 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 2 weeks ago
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Updated this week
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- FUSE filesystem for the DNAnexus storage system☆13Apr 24, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A crate for working with genomics chain files.☆15Updated this week
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Jan 22, 2026Updated 6 months ago
- Rust crates for working with Workflow Description Language (WDL) documents.☆62Sep 23, 2025Updated 10 months ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated last week
- A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.☆55Jun 25, 2026Updated last month
- Per-base per-nucleotide depth analysis☆150May 9, 2026Updated 2 months ago
- Alignment-based gene expression quantification☆38Updated this week
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆24Aug 22, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 7 months ago
- A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).☆186Updated this week
- A performant Kubernetes-based task executor for the Task Execution Service (TES) 1.1 specification.☆19Updated this week
- bioinformatics toolkit in rust☆107Jul 16, 2026Updated last week
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Bioinformatics I/O libraries in Rust☆712Updated this week
- ☆40Sep 14, 2016Updated 9 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆44Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- gia: Genomic Interval Arithmetic☆67Aug 21, 2024Updated last year
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated 3 months ago
- Python library for simple and complex indels.☆12Jan 22, 2024Updated 2 years ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- Fast and exact gap-affine partial order alignment☆69Apr 25, 2026Updated 3 months ago
- A port of biocommons/hgvs to the Rust programming language☆18Jun 29, 2026Updated 3 weeks ago
- Fast FASTQ sample demultiplexing in Rust.☆70Updated this week
- A high efficiency binary format for sequencing data☆103Updated this week
- Foundations for the Rust omics ecosystem.☆20Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Exon is an OLAP query engine specifically for biology and life science applications.☆71Mar 26, 2025Updated last year
- ☆18Jan 29, 2025Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆28Jun 20, 2026Updated last month
- A command line utilty for working with BINSEQ files☆39Updated this week
- an API for intersections of genomic data☆148Mar 12, 2026Updated 4 months ago