Command line utility for working with next-generation sequencing files.
☆39Jun 24, 2025Updated last year
Alternatives and similar repositories for ngs
Users that are interested in ngs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Command line utility for manipulating FASTQ files☆103Updated this week
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 2 months ago
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Sep 7, 2026Updated 2 weeks ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- FUSE filesystem for the DNAnexus storage system☆13Apr 24, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A crate for working with genomics chain files.☆15Jul 20, 2026Updated 2 months ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- Rust crates for working with Workflow Description Language (WDL) documents.☆62Sep 23, 2025Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last month
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 2 months ago
- A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.☆58Aug 26, 2026Updated 3 weeks ago
- Per-base per-nucleotide depth analysis☆151May 9, 2026Updated 4 months ago
- Alignment-based gene expression quantification☆40Aug 4, 2026Updated last month
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆24Sep 3, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 9 months ago
- A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).☆214Updated this week
- A performant Kubernetes-based task executor for the Task Execution Service (TES) 1.1 specification.☆18Sep 16, 2026Updated last week
- bioinformatics toolkit in rust☆107Aug 16, 2026Updated last month
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- Bioinformatics I/O libraries in Rust☆724Updated this week
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆48Updated this week
- gia: Genomic Interval Arithmetic☆69Aug 21, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆40Sep 14, 2016Updated 10 years ago
- JTK -- a regional diploid genome assembler☆27Apr 22, 2026Updated 5 months ago
- Python library for simple and complex indels.☆13Jan 22, 2024Updated 2 years ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- Fast and exact gap-affine partial order alignment☆71Sep 16, 2026Updated last week
- A port of biocommons/hgvs to the Rust programming language☆18Sep 14, 2026Updated last week
- Fast FASTQ sample demultiplexing in Rust.☆71Aug 28, 2026Updated 3 weeks ago
- A high efficiency binary format for sequencing data☆108Aug 26, 2026Updated 3 weeks ago
- Foundations for the Rust omics ecosystem.☆35Jul 23, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Exon is an OLAP query engine specifically for biology and life science applications.☆71Mar 26, 2025Updated last year
- ☆18Jan 29, 2025Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated last year
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆30Jul 26, 2026Updated last month
- A command line utilty for working with BINSEQ files☆41Aug 25, 2026Updated 3 weeks ago
- an API for intersections of genomic data☆149Sep 17, 2026Updated last week