onecodex / needletailLinks
Fast FASTX parsing and k-mer methods in Rust
☆200Updated 4 months ago
Alternatives and similar repositories for needletail
Users that are interested in needletail are comparing it to the libraries listed below
Sorting:
- FASTA and FASTQ parsing in Rust☆80Updated 8 months ago
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆129Updated this week
- The D4 Quantitative Data Format☆168Updated last week
- ☆50Updated 3 years ago
- A pairwise sequence aligner written in Rust☆142Updated last month
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆136Updated 9 months ago
- bioinformatics toolkit in rust☆93Updated 2 months ago
- Rust bindings to minimap2 library☆101Updated 2 weeks ago
- an API for intersections of genomic data☆120Updated last week
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆338Updated 2 weeks ago
- Randomly subsample sequencing reads or alignments☆246Updated last week
- Per-base per-nucleotide depth analysis☆141Updated 2 months ago
- De Bruijn graphs in Rust☆71Updated last year
- A set of command line utilities based on Rust-Bio.☆201Updated last year
- Command line utility for manipulating Illumina-generated FASTQ files.☆93Updated 2 months ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆183Updated last year
- Fasten toolkit, for streaming operations on fastq files☆80Updated last month
- Compacted and colored de Bruijn graph construction and querying☆85Updated this week
- A high-performance BigWig and BigBed library in Rust☆107Updated last month
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆163Updated this week
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Updated 3 years ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Updated 4 years ago
- A fast K-mer counter for high-fidelity shotgun datasets☆135Updated 2 months ago
- Bioinformatics Algorithms implemented in Rust for Learners☆31Updated 4 years ago
- Grep for FASTQ files☆102Updated 2 weeks ago
- A quality control tool for FASTQ files written in rust☆52Updated 5 months ago
- A high efficiency binary format for sequencing data☆83Updated this week
- Minimal but speedy quality control for nanopore reads in Rust☆137Updated last year
- diploid SNV caller for error-prone reads☆203Updated last year
- An efficient index for the colored, compacted, de Bruijn graph☆110Updated last year