Fast FASTX parsing and k-mer methods in Rust
☆214Oct 6, 2026Updated 3 weeks ago
Alternatives and similar repositories for needletail
Users that are interested in needletail are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- Rust bindings to minimap2 library☆114Sep 14, 2026Updated last month
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54Updated this week
- Bioinformatics I/O libraries in Rust☆729Oct 15, 2026Updated 2 weeks ago
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆375Aug 17, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- FASTA and FASTQ parsing in Rust☆84Mar 14, 2025Updated last year
- Simple and transparent support for compressed files.☆81Sep 23, 2026Updated last month
- Fasten toolkit, for streaming operations on fastq files☆84Oct 12, 2026Updated 2 weeks ago
- Benchmarking programming languages/implementations for common tasks in Bioinformatics☆185Dec 9, 2021Updated 4 years ago
- Fast approximate string searching☆171Updated this week
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- How many distinct k-mers are there in a sequence?☆11Feb 4, 2026Updated 8 months ago
- A genomic minhashing implementation in Rust☆100Jul 8, 2026Updated 3 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- an API for intersections of genomic data☆150Oct 4, 2026Updated 3 weeks ago
- Tearing through FASTA/Q sequences☆42Updated this week
- Randomly subsample sequencing reads or alignments☆279Oct 19, 2026Updated last week
- A high efficiency binary format for sequencing data☆110Aug 26, 2026Updated 2 months ago
- A pairwise sequence aligner written in Rust☆152May 22, 2026Updated 5 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 3 months ago
- A very fast interval tree data structure☆137Feb 3, 2025Updated last year
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆131Dec 30, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆53Sep 20, 2022Updated 4 years ago
- k-mers and the like☆22Oct 18, 2026Updated last week
- Per-base per-nucleotide depth analysis☆153May 9, 2026Updated 5 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆51Oct 22, 2026Updated last week
- Fast and exact gap-affine partial order alignment☆71Oct 22, 2026Updated last week
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆296Jun 10, 2026Updated 4 months ago
- Fast interval intersection library☆44Updated this week
- syncmer graphs, and perhaps other sorts of sequence graphs☆50Oct 13, 2026Updated 2 weeks ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- bedtools-like functionality for interval sets in rust☆56Aug 5, 2025Updated last year
- gia: Genomic Interval Arithmetic☆69Aug 21, 2024Updated 2 years ago
- The D4 Quantitative Data Format☆176Nov 28, 2025Updated 11 months ago
- This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementat…☆1,844Oct 12, 2026Updated 2 weeks ago
- Minimal but speedy quality control for nanopore reads in Rust☆139Sep 16, 2024Updated 2 years ago
- Grep for FASTQ files☆103Sep 26, 2026Updated last month