onecodex / needletailLinks
Fast FASTX parsing and k-mer methods in Rust
☆199Updated 3 months ago
Alternatives and similar repositories for needletail
Users that are interested in needletail are comparing it to the libraries listed below
Sorting:
- FASTA and FASTQ parsing in Rust☆78Updated 8 months ago
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆129Updated this week
- A pairwise sequence aligner written in Rust☆141Updated 3 weeks ago
- The D4 Quantitative Data Format☆168Updated 6 months ago
- ☆50Updated 3 years ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆137Updated 9 months ago
- bioinformatics toolkit in rust☆93Updated last month
- Per-base per-nucleotide depth analysis☆140Updated last month
- Randomly subsample sequencing reads or alignments☆245Updated last week
- Command line utility for manipulating Illumina-generated FASTQ files.☆92Updated last month
- Rust bindings to minimap2 library☆101Updated 3 weeks ago
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆337Updated last month
- De Bruijn graphs in Rust☆70Updated last year
- an API for intersections of genomic data☆73Updated this week
- A set of command line utilities based on Rust-Bio.☆200Updated last year
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Updated 3 years ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆183Updated last year
- Fasten toolkit, for streaming operations on fastq files☆80Updated 3 weeks ago
- diploid SNV caller for error-prone reads☆204Updated last year
- Compacted and colored de Bruijn graph construction and querying☆84Updated 3 weeks ago
- Grep for FASTQ files☆102Updated 7 months ago
- A high-performance BigWig and BigBed library in Rust☆107Updated 3 weeks ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆164Updated last week
- A Rust library and command line tool for working with genomic ranges and their data.☆100Updated last year
- A fast K-mer counter for high-fidelity shotgun datasets☆134Updated 2 months ago
- Single-Cell RNA-seq pseudo-aligner☆52Updated last year
- Minimal but speedy quality control for nanopore reads in Rust☆138Updated last year
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Updated 4 years ago
- A high efficiency binary format for sequencing data☆77Updated last month
- A very fast interval tree data structure☆125Updated 9 months ago