Fast FASTX parsing and k-mer methods in Rust
☆210Apr 2, 2026Updated last week
Alternatives and similar repositories for needletail
Users that are interested in needletail are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- Rust bindings to minimap2 library☆109Mar 30, 2026Updated last week
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆363Jan 29, 2026Updated 2 months ago
- FASTA and FASTQ parsing in Rust☆83Mar 14, 2025Updated last year
- Bioinformatics I/O libraries in Rust☆671Mar 27, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Simple and transparent support for compressed files.☆81Feb 27, 2026Updated last month
- Benchmarking programming languages/implementations for common tasks in Bioinformatics☆184Dec 9, 2021Updated 4 years ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54Mar 23, 2026Updated 2 weeks ago
- Fasten toolkit, for streaming operations on fastq files☆81Oct 24, 2025Updated 5 months ago
- k-mers and the like☆22Updated this week
- an API for intersections of genomic data☆149Mar 12, 2026Updated 3 weeks ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 2 months ago
- A genomic minhashing implementation in Rust☆103Jun 17, 2025Updated 9 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A pairwise sequence aligner written in Rust☆153Jan 27, 2026Updated 2 months ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- ☆52Sep 20, 2022Updated 3 years ago
- A very fast interval tree data structure☆131Feb 3, 2025Updated last year
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Dec 30, 2020Updated 5 years ago
- Randomly subsample sequencing reads or alignments☆258Apr 1, 2026Updated last week
- Grep for FASTQ files☆104Mar 28, 2026Updated last week
- Per-base per-nucleotide depth analysis☆149Mar 16, 2026Updated 3 weeks ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 11 months ago
- Fast interval intersection library☆44Aug 20, 2025Updated 7 months ago
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementat…☆1,781Feb 23, 2026Updated last month
- Fast and flexible tool for reading, modifying and writing biological sequences☆18Feb 4, 2026Updated 2 months ago
- Minimal but speedy quality control for nanopore reads in Rust☆137Sep 16, 2024Updated last year
- Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)☆58Jan 28, 2023Updated 3 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆65Apr 10, 2025Updated 11 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆290Jan 16, 2026Updated 2 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆111Mar 11, 2026Updated 3 weeks ago
- De Bruijn graphs in Rust☆71Jul 22, 2024Updated last year
- A versatile toolkit for k-mers with taxonomic information☆82Aug 28, 2025Updated 7 months ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- Creating alignment plots from bam files☆122Apr 1, 2026Updated last week
- Fast approximate string searching☆115Mar 28, 2026Updated last week