Alternatives and similar repositories for needletail

Users that are interested in needletail are comparing it to the libraries listed below

• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆78Updated 7 months ago
• varlociraptor / varlociraptor
  Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
  ☆129Updated last week
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆167Updated 6 months ago
• RagnarGrootKoerkamp / astar-pairwise-aligner
  A pairwise sequence aligner written in Rust
  ☆137Updated 3 months ago
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆137Updated 8 months ago
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• mbhall88 / rasusa
  Randomly subsample sequencing reads or alignments
  ☆244Updated last week
• rust-bio / rust-htslib
  This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
  ☆336Updated 2 weeks ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆101Updated last week
• rust-bio / rust-bio-tools
  A set of command line utilities based on Rust-Bio.
  ☆199Updated last year
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆70Updated last year
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆142Updated last month
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆92Updated last month
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆91Updated 3 weeks ago
• dcjones / coitrees
  A very fast interval tree data structure
  ☆125Updated 8 months ago
• smarco / WFA-paper
  Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
  ☆200Updated 3 years ago
• ekimb / rust-mdbg
  minimizer-space de Bruijn graphs (mdBG) for whole genome assembly
  ☆182Updated last year
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆80Updated this week
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆162Updated this week
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆98Updated 6 months ago
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆84Updated this week
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆74Updated last week
• esteinig / nanoq
  Minimal but speedy quality control for nanopore reads in Rust
  ☆138Updated last year
• fastqc-rs / fastqc-rs
  A quality control tool for FASTQ files written in rust
  ☆52Updated 4 months ago
• sharkLoc / rust-in-bioinformatics
  A collection of genomics software tools written in Rust
  ☆75Updated this week
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆104Updated last week
• pjedge / longshot
  diploid SNV caller for error-prone reads
  ☆202Updated last year
• Daniel-Liu-c0deb0t / block-aligner
  SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …
  ☆138Updated last year
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆75Updated 3 weeks ago
• thegenemyers / FASTK
  A fast K-mer counter for high-fidelity shotgun datasets
  ☆131Updated last month