onecodex / needletailLinks
Fast FASTX parsing and k-mer methods in Rust
☆192Updated 2 months ago
Alternatives and similar repositories for needletail
Users that are interested in needletail are comparing it to the libraries listed below
Sorting:
- FASTA and FASTQ parsing in Rust☆79Updated 4 months ago
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆127Updated last week
- The D4 Quantitative Data Format☆166Updated 2 months ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆132Updated 5 months ago
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆330Updated last week
- ☆51Updated 2 years ago
- A set of command line utilities based on Rust-Bio.☆197Updated last year
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆127Updated 4 years ago
- Command line utility for manipulating Illumina-generated FASTQ files.☆87Updated 4 months ago
- Randomly subsample sequencing reads or alignments☆232Updated last week
- A very fast interval tree data structure☆123Updated 5 months ago
- Rust bindings to minimap2 library☆101Updated 2 weeks ago
- A pairwise sequence aligner written in Rust☆134Updated 2 months ago
- De Bruijn graphs in Rust☆71Updated 11 months ago
- A high-performance BigWig and BigBed library in Rust☆100Updated last month
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆182Updated 9 months ago
- bioinformatics toolkit in rust☆90Updated last month
- A genomic minhashing implementation in Rust☆99Updated last month
- diploid SNV caller for error-prone reads☆202Updated last year
- Minimal but speedy quality control for nanopore reads in Rust☆137Updated 10 months ago
- Grep for FASTQ files☆98Updated 3 months ago
- A small database of weird gene annotations☆203Updated 2 weeks ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆193Updated last week
- An efficient index for the colored, compacted, de Bruijn graph☆111Updated 9 months ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆136Updated last year
- Per-base per-nucleotide depth analysis☆134Updated 2 weeks ago
- long read RNA-seq quantification☆88Updated 2 weeks ago
- Fasten toolkit, for streaming operations on fastq files☆79Updated 3 months ago
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆200Updated 3 years ago