Alternatives and similar repositories for needletail:

Users that are interested in needletail are comparing it to the libraries listed below

• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆77Updated last month
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆161Updated 2 weeks ago
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆85Updated 2 months ago
• varlociraptor / varlociraptor
  Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
  ☆124Updated this week
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆132Updated 2 months ago
• rust-bio / rust-htslib
  This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
  ☆325Updated last month
• mbhall88 / rasusa
  Randomly subsample sequencing reads or alignments
  ☆229Updated 5 months ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆127Updated 3 months ago
• ekimb / rust-mdbg
  minimizer-space de Bruijn graphs (mdBG) for whole genome assembly
  ☆181Updated 7 months ago
• aseyboldt / fastq-rs
  ☆51Updated 2 years ago
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆186Updated last week
• dcjones / coitrees
  A very fast interval tree data structure
  ☆117Updated 3 months ago
• onecodex / finch-rs
  A genomic minhashing implementation in Rust
  ☆94Updated last year
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆95Updated last week
• cmdcolin / oddgenes
  A small database of weird gene annotations
  ☆203Updated 2 weeks ago
• ekg / seqwish
  alignment to variation graph inducer
  ☆147Updated 2 months ago
• pjedge / longshot
  diploid SNV caller for error-prone reads
  ☆199Updated last year
• rust-bio / rust-bio-tools
  A set of command line utilities based on Rust-Bio.
  ☆192Updated 10 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆88Updated 2 weeks ago
• RagnarGrootKoerkamp / astar-pairwise-aligner
  A pairwise sequence aligner written in Rust
  ☆132Updated 2 weeks ago
• pirovc / genome_updater
  Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redunda…
  ☆155Updated 4 months ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆97Updated 3 weeks ago
• datavzrd / datavzrd
  A tool to create visual HTML reports from collections of CSV/TSV tables
  ☆120Updated this week
• natir / yacrd
  Yet Another Chimeric Read Detector
  ☆78Updated 6 months ago
• fastqc-rs / fastqc-rs
  A quality control tool for FASTQ files written in rust
  ☆49Updated 9 months ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆149Updated last month
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated last month
• COMBINE-lab / pufferfish
  An efficient index for the colored, compacted, de Bruijn graph
  ☆109Updated 7 months ago
• lbcb-sci / herro
  HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …
  ☆212Updated 2 weeks ago
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆83Updated last week