medvedevgroup / bloomtree-allsome
Sequence Bloom Trees with All/Some split
☆11Updated 6 years ago
Alternatives and similar repositories for bloomtree-allsome:
Users that are interested in bloomtree-allsome are comparing it to the libraries listed below
- Hidden Markov Model based Copy number caller☆20Updated 2 months ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Index and query k-mer matrices in BGZF☆12Updated 6 years ago
- ☆14Updated 8 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 4 years ago
- ☆12Updated 3 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- ☆14Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- Lossless VCF compression☆18Updated 2 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- Integrated Variant Caller☆17Updated 6 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Mapping-free variant caller for short-read Illumina data☆18Updated 4 years ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- Pan gGnome Viewer☆10Updated 11 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- ☆25Updated 3 years ago
- comb aligner -- a graphical nucleotide sequence alignment tool☆9Updated 8 years ago
- Linear-time, low-memory construction of variation graphs☆18Updated 4 years ago
- Variant call adjudication☆16Updated 7 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- The python binding for D4 format☆16Updated 3 years ago