Alternatives and similar repositories for bloomtree-allsome:

Users that are interested in bloomtree-allsome are comparing it to the libraries listed below

• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 5 years ago
• jaudoux / kamix
  Index and query k-mer matrices in BGZF
  ☆12Updated 6 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 3 months ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 9 years ago
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 4 years ago
• namsyvo / IVC
  Integrated Variant Caller
  ☆17Updated 6 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• dnanexus / IndexTools
  IndexTools is a toolkit for extremely fast NGS analysis based on index files.
  ☆17Updated 2 years ago
• ekg / wflign
  the we-flyin WFA-guided ultralong tiling sequence aligner
  ☆11Updated 3 years ago
• DecodeGenetics / popvcf
  Lossless VCF compression
  ☆18Updated 2 years ago
• walaj / svlib
  Toolkit for extracting SVs from long sequences and benchmarking variant callers
  ☆13Updated 8 years ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated 2 years ago
• ocxtal / comb
  comb aligner -- a graphical nucleotide sequence alignment tool
  ☆9Updated 8 years ago
• cdarby / genomicsjc
  Johns Hopkins University student-led genomics paper discussion group
  ☆13Updated 4 years ago
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated 8 months ago
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated last year
• mreppell / Karp
  Accurate and fast taxonomic classification using pseudoaligning
  ☆21Updated 7 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 2 months ago
• richarddurbin / hash10x
  a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly
  ☆15Updated 5 years ago
• TavorB / spectral_jaccard_similarity
  ☆14Updated 2 years ago
• mchaisso / mcutils
  ☆12Updated 3 years ago
• luizirber / ukhs
  Universal K-mer Hitting Set library in Rust
  ☆10Updated 4 years ago
• langmead-lab / vargas
  ☆25Updated 3 years ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 4 years ago
• nh13 / fqme
  ☆22Updated 2 months ago
• 38 / pyd4
  The python binding for D4 format
  ☆16Updated 3 years ago
• bede / tictax
  Streaming sequence classification with web services ✓📌
  ☆19Updated 2 years ago
• isovic / minialign
  Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.
  ☆10Updated 7 years ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆22Updated last year