medvedevgroup / bloomtree-allsomeLinks
Sequence Bloom Trees with All/Some split
☆11Updated 6 years ago
Alternatives and similar repositories for bloomtree-allsome
Users that are interested in bloomtree-allsome are comparing it to the libraries listed below
Sorting:
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- ☆14Updated 9 years ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 7 years ago
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- Lossless VCF compression☆20Updated 3 years ago
- ☆18Updated 7 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 4 years ago
- ☆25Updated this week
- Indel-aware consensus for aligned BAM☆21Updated 2 weeks ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 6 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- reference free variant assembly☆34Updated 2 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 5 months ago
- Detects human contamination in bam files☆16Updated 4 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Streaming sequence classification with web services ✓📌☆19Updated 2 years ago
- Integrated Variant Caller☆17Updated 7 years ago