ArcInstitute / binseqLinks
A high efficiency binary format for sequencing data
☆89Updated this week
Alternatives and similar repositories for binseq
Users that are interested in binseq are comparing it to the libraries listed below
Sorting:
- Fasten toolkit, for streaming operations on fastq files☆81Updated 2 months ago
- bioinformatics toolkit in rust☆93Updated 3 months ago
- A command line utilty for working with BINSEQ files☆33Updated last week
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆61Updated last month
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- Command line utility for working with next-generation sequencing files.☆37Updated 6 months ago
- bedtools-like functionality for interval sets in rust☆55Updated 5 months ago
- An efficient CLI to extract sequences from the SRA☆119Updated 2 months ago
- gia: Genomic Interval Arithmetic☆65Updated last year
- expressions on VCFs☆89Updated 9 months ago
- A pairwise sequence aligner written in Rust☆145Updated 2 months ago
- FASTA and FASTQ parsing in Rust☆81Updated 10 months ago
- an API for intersections of genomic data☆139Updated last month
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Bit-packed and well-typed biological sequences☆44Updated 2 months ago
- A high-performance BigWig and BigBed library in Rust☆111Updated 2 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last month
- Creating alignment plots from bam files☆100Updated this week
- Single-Cell RNA-seq pseudo-aligner☆52Updated last year
- quickly filter fastq files by matching sequences to a set of regex patterns☆57Updated last month
- Single-cell analysis methods in Rust☆28Updated 2 months ago
- Grep for FASTQ files☆103Updated last month
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆40Updated last week
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆143Updated last month
- ☆50Updated 3 years ago
- Convert vcf in parquet☆28Updated 11 months ago
- A quality control tool for FASTQ files written in rust☆52Updated 7 months ago
- Alignment-based gene expression quantification☆35Updated 4 months ago
- Nail is an Alignment Inference tooL☆54Updated last week
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated last year