A high efficiency binary format for sequencing data
☆103May 5, 2026Updated last month
Alternatives and similar repositories for binseq
Users that are interested in binseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A command line utilty for working with BINSEQ files☆39Updated this week
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 6 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆43May 21, 2026Updated last month
- An efficient CLI to extract sequences from the SRA☆123Jun 12, 2026Updated 2 weeks ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast approximate string searching☆153Jun 20, 2026Updated last week
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- A fast terminal-based viewer and command-line toolkit for molecular sequences (DNA, AA). View, translate, convert (to FASTA), and combine…☆43Mar 10, 2026Updated 3 months ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated last year
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 7 months ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆64Mar 25, 2026Updated 3 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆134Jun 15, 2026Updated 2 weeks ago
- ☆21Feb 15, 2025Updated last year
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 10 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆44Mar 9, 2026Updated 3 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- Bitpacked sequence trait and implementation☆18Feb 27, 2026Updated 4 months ago
- Efficient querying of biological databases☆44Oct 27, 2025Updated 8 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 9 months ago
- ☆31Mar 27, 2024Updated 2 years ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆221Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Fast sequence distance estimates☆30Jun 17, 2026Updated last week
- Graph model execution API for Candle☆18Jul 27, 2025Updated 11 months ago
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated 2 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Updated this week
- bioinformatics toolkit in rust☆107May 14, 2026Updated last month
- plane sweep filtering genome alignments☆24May 23, 2026Updated last month
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆24Jun 5, 2026Updated 3 weeks ago
- Remove human reads from a sequencing run☆48Jun 22, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆89Mar 12, 2026Updated 3 months ago
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated last month
- Performance-critical tools to manipulate, analyze, and process genomic interval data☆28Jun 19, 2026Updated last week
- A new high-resolution long-read metagenome assembler for even noisy reads☆155Jun 11, 2026Updated 2 weeks ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- parallel differential expression for single-cell perturbation sequencing☆25Updated this week