Alternatives and similar repositories for binseq:

Users that are interested in binseq are comparing it to the libraries listed below

• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆14Updated 3 months ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated last year
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆34Updated 2 months ago
• noamteyssier / paraseq
  A minimal copy fastq and fasta reader built for parallel support and paired end processing
  ☆13Updated last week
• wh-xu / Hyper-Gen
  HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors
  ☆27Updated 8 months ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆26Updated 10 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆51Updated 8 months ago
• dwpeng / filterx
  process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED
  ☆22Updated 2 months ago
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆29Updated 5 months ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆45Updated last week
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated 7 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆62Updated 8 months ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆21Updated 2 months ago
• jguhlin / sfasta
  sfasta
  ☆35Updated 4 months ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆19Updated last week
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆50Updated 11 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated 2 weeks ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated 2 weeks ago
• COMBINE-lab / piscem-infer
  ☆14Updated last year
• oxli-bio / oxli
  k-mers and the like
  ☆21Updated this week
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆31Updated 3 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated this week
• brentp / vcfexpress
  expressions on VCFs
  ☆83Updated this week
• pantherdb / TreeGrafter
  TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.
  ☆11Updated 4 years ago
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆25Updated 2 months ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆33Updated 8 months ago
• baku4 / sigalign
  A Similarity-Guided Alignment Algorithm
  ☆26Updated last month
• alejandrogzi / gxf2bed
  fastest GTF/GFF-to-BED converter chilling around
  ☆25Updated 3 months ago
• AndreaGuarracino / chain2paf
  convert CHAIN format to PAF format
  ☆14Updated 4 months ago