A high efficiency binary format for sequencing data
☆105Aug 26, 2026Updated this week
Alternatives and similar repositories for binseq
Users that are interested in binseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A command line utilty for working with BINSEQ files☆39Updated this week
- A minimap2 implementation with binseq inputs☆17Dec 11, 2025Updated 8 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆48Aug 19, 2026Updated last week
- Fast approximate string searching☆164Aug 11, 2026Updated 2 weeks ago
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An efficient CLI to extract sequences from the SRA☆126Jun 12, 2026Updated 2 months ago
- Fast sequence distance estimates☆31Updated this week
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆28Updated this week
- Fast DNA search and [host] depletion using minimizers☆125Updated this week
- A Rust implementation of SSHash☆19Aug 9, 2026Updated 3 weeks ago
- Efficient querying of biological databases☆45Oct 27, 2025Updated 10 months ago
- Fast FASTX parsing and k-mer methods in Rust☆214Jun 22, 2026Updated 2 months ago
- High-Performance Sparse Matrix Library☆19Nov 23, 2025Updated 9 months ago
- An extensible and performant aligner and read mapper☆103Jul 27, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last week
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 5 months ago
- Remove human reads from a sequencing run☆52Jun 29, 2026Updated 2 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆166Jul 3, 2026Updated last month
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries☆48Updated this week
- Rust bindings to minimap2 library☆113May 3, 2026Updated 3 months ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- A SIMD-accelerated library to compute random minimizers☆46Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆15Apr 1, 2026Updated 4 months ago
- ☆21Feb 15, 2025Updated last year
- parallel differential expression for single-cell perturbation sequencing☆29Updated this week
- ☆27Jun 16, 2026Updated 2 months ago
- Bit-packed and well-typed biological sequences☆46Jul 26, 2026Updated last month
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- Bitpacked sequence trait and implementation☆19Aug 19, 2026Updated last week
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆64Mar 25, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆44Jul 31, 2026Updated 3 weeks ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 7 months ago
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 3 months ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated last year
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Successor of bwa-mem for short-read alignment☆332Aug 13, 2026Updated 2 weeks ago