A minimal copy fastq and fasta reader built for parallel support and paired end processing
☆50Aug 19, 2026Updated 2 weeks ago
Alternatives and similar repositories for paraseq
Users that are interested in paraseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- Tearing through FASTA/Q sequences☆39Jul 9, 2026Updated last month
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Updated this week
- Fast approximate string searching☆165Aug 11, 2026Updated 3 weeks ago
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆15Apr 1, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A command line utilty for working with BINSEQ files☆40Aug 25, 2026Updated last week
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 6 months ago
- An extensible and performant aligner and read mapper☆103Jul 27, 2026Updated last month
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated 2 weeks ago
- Fast DNA search and [host] depletion using minimizers☆126Aug 26, 2026Updated last week
- A high efficiency binary format for sequencing data☆106Aug 26, 2026Updated last week
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Aug 26, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Parallel Construction of Suffix Arrays in Rust☆26Updated this week
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 9 months ago
- Bitpacked sequence trait and implementation☆19Aug 19, 2026Updated 2 weeks ago
- A SIMD-accelerated library to compute random minimizers☆46Aug 26, 2026Updated last week
- k-mers and the like☆23Aug 30, 2026Updated last week
- Fast sequence distance estimates☆32Aug 24, 2026Updated 2 weeks ago
- kmer-counter based on kache-hash☆16Updated this week
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆24Updated this week
- Remove human reads from a sequencing run☆52Jun 29, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated last month
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- plane sweep filtering genome alignments☆24Jul 25, 2026Updated last month
- ☆21Dec 26, 2025Updated 8 months ago
- ☆27Jun 16, 2026Updated 2 months ago
- Extremely fast and accurate Nanopore demultiplexing☆106Jul 18, 2026Updated last month
- ☆21Feb 15, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Simple and transparent support for compressed files.☆81Updated this week
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- Bit-packed and well-typed biological sequences☆46Updated this week
- ☆17Apr 6, 2023Updated 3 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 3 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 2 months ago