AshleyLab / scotchLinks
Scotch pipeline for indel calling.
☆10Updated 5 years ago
Alternatives and similar repositories for scotch
Users that are interested in scotch are comparing it to the libraries listed below
Sorting:
- Removing PCR duplicates for sequencing reads.☆14Updated 5 years ago
- Variant call adjudication☆16Updated last year
- Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research☆13Updated 3 years ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 10 months ago
- Pipeline for analyzing (rare) mutations in metagenome-assembled genomes☆10Updated 5 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 2 weeks ago
- Importing vg json graphs to Python data structures.☆11Updated 4 years ago
- ☆14Updated 5 years ago
- Construct a Physical Map from Linked Reads☆18Updated last year
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆12Updated 7 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Updated 2 months ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Updated 5 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated 11 months ago
- ☆12Updated last week
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆14Updated 4 months ago
- reference free variant assembly☆34Updated 2 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14Updated last year
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11Updated 5 years ago
- mreps: software for tandem repeat identification in DNA☆15Updated 5 years ago
- ☆12Updated 2 years ago
- MEM mapper prototype☆13Updated 4 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Updated 9 years ago