A SIMD-accelerated library to compute random minimizers
☆46Jul 7, 2026Updated last month
Alternatives and similar repositories for simd-minimizers
Users that are interested in simd-minimizers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 5 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Jul 29, 2026Updated last week
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated last month
- Bitpacked sequence trait and implementation☆19Jul 7, 2026Updated last month
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 8 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21May 31, 2026Updated 2 months ago
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆15Apr 1, 2026Updated 4 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆163Jul 3, 2026Updated last month
- kmer-counter based on kache-hash☆16Jul 30, 2026Updated last week
- Fast approximate string searching☆162Aug 3, 2026Updated last week
- An extensible and performant aligner and read mapper☆100Jul 27, 2026Updated 2 weeks ago
- Rust bindings to minimap2 library☆113May 3, 2026Updated 3 months ago
- ☆27Jun 16, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Compacted and colored de Bruijn graph construction and querying☆99Jul 1, 2026Updated last month
- Fast DNA search and [host] depletion using minimizers☆120Updated this week
- Ultra-rapid detection of viral variants directly from sequencing data☆47Jul 30, 2026Updated last week
- sunburst plots for taxonomy - working to update Krona☆46Sep 22, 2025Updated 10 months ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆45Updated this week
- ☆21Feb 15, 2025Updated last year
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Fast sequence distance estimates☆30Aug 3, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Genome size estimation from long read overlaps☆92Aug 4, 2026Updated last week
- ☆17Aug 8, 2025Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆134Jul 29, 2026Updated last week
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆55Jun 10, 2026Updated 2 months ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆27Jun 25, 2026Updated last month
- Approximate nearest neighbour search for microbial genomes based on hash metric☆66Jun 10, 2026Updated 2 months ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆108Updated this week
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Updated this week
- syncmer graphs, and perhaps other sorts of sequence graphs☆44Jul 31, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pairwise whole genome aligner☆243Jul 29, 2026Updated last week
- BWT construction and search☆130Jan 14, 2026Updated 6 months ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 10 months ago
- Basecalling configuration prediction through FASTQ files☆34Mar 17, 2026Updated 4 months ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆45Mar 9, 2026Updated 5 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆223Updated this week
- ☆14Oct 14, 2020Updated 5 years ago