A SIMD-accelerated library to compute random minimizers
☆47Aug 26, 2026Updated 3 weeks ago
Alternatives and similar repositories for simd-minimizers
Users that are interested in simd-minimizers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 6 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last month
- Tearing through FASTA/Q sequences☆39Jul 9, 2026Updated 2 months ago
- Bitpacked sequence trait and implementation☆19Aug 19, 2026Updated last month
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Sep 3, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 10 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Aug 26, 2026Updated 3 weeks ago
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆18Apr 1, 2026Updated 5 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆170Sep 9, 2026Updated last week
- An extensible and performant aligner and read mapper☆105Updated this week
- Fast approximate string searching☆168Aug 11, 2026Updated last month
- Rust bindings to minimap2 library☆113Updated this week
- ☆27Jun 16, 2026Updated 3 months ago
- Compacted and colored de Bruijn graph construction and querying☆101Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- kmer-counter based on kache-hash☆19Updated this week
- Fast DNA search and [host] depletion using minimizers☆126Sep 9, 2026Updated last week
- Ultra-rapid detection of viral variants directly from sequencing data☆47Updated this week
- sunburst plots for taxonomy - working to update Krona☆48Sep 22, 2025Updated 11 months ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆50Updated this week
- ☆21Feb 15, 2025Updated last year
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Fast sequence distance estimates☆34Aug 24, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Genome size estimation from long read overlaps☆97Sep 8, 2026Updated last week
- ☆17Aug 8, 2025Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆137Jul 29, 2026Updated last month
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆55Jun 10, 2026Updated 3 months ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Updated this week
- Approximate nearest neighbour search for microbial genomes based on hash metric☆66Jun 10, 2026Updated 3 months ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆109Sep 3, 2026Updated 2 weeks ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Sep 7, 2026Updated last week
- syncmer graphs, and perhaps other sorts of sequence graphs☆48Aug 28, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pairwise whole genome aligner☆244Sep 4, 2026Updated 2 weeks ago
- BWT construction and search☆131Aug 30, 2026Updated 3 weeks ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated last year
- Basecalling configuration prediction from FASTQ files☆34Mar 17, 2026Updated 6 months ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆46Mar 9, 2026Updated 6 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆227Updated this week
- ☆14Oct 14, 2020Updated 5 years ago