β° covtobed | Convert the coverage track from a BAM file into a BED file
β44Nov 6, 2025Updated 5 months ago
Alternatives and similar repositories for covtobed
Users that are interested in covtobed are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- π coverage extraction from BAM/CRAM files, supporting targets π Ββ65Mar 20, 2026Updated last month
- Simulate mutations in genomesβ15Jun 15, 2020Updated 5 years ago
- A command line program for large scale buffering between piped programsβ17Nov 19, 2021Updated 4 years ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositoriesβ14Mar 29, 2025Updated last year
- seqfu - Sequece Fastx Utilitiesβ126Updated this week
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-langβ31Apr 20, 2020Updated 5 years ago
- Per-base per-nucleotide depth analysisβ149Mar 16, 2026Updated last month
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.β17Aug 19, 2022Updated 3 years ago
- Detects human contamination in bam filesβ16Sep 10, 2020Updated 5 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)β144Aug 24, 2025Updated 7 months ago
- BigWig and BAM utilitiesβ103Mar 26, 2024Updated 2 years ago
- Structural variant VCF annotation, duplicate removal and comparisonβ37Oct 14, 2025Updated 6 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samplesβ51Apr 9, 2021Updated 5 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sitesβ34Jun 6, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Whole Genome Sequenceing Structural Variation Pipelinesβ18Apr 4, 2019Updated 7 years ago
- CLI to automate Nextflow pipeline testingβ12Dec 15, 2025Updated 4 months ago
- Variant call adjudicationβ16Jun 13, 2024Updated last year
- A minimal copy fastq and fasta reader built for parallel support and paired end processingβ42Mar 24, 2026Updated 3 weeks ago
- vembrane filters VCF records using python expressionsβ69Apr 10, 2026Updated last week
- A lightweight library for working with PAF (Pairwise mApping Format) filesβ30May 3, 2022Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.β20Mar 27, 2026Updated 3 weeks ago
- Get microbial sequence data easier and fasterβ28Nov 7, 2019Updated 6 years ago
- Portable Crystal binary distributions for Linux on x86_64β15Mar 22, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Filter of Pairwise Alignementβ44Jan 31, 2022Updated 4 years ago
- structural variant database softwareβ48Feb 16, 2026Updated 2 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencingβ19Updated this week
- VEP-like tool for sequence ontology and HGVS annotation of VCF filesβ27Apr 11, 2026Updated last week
- Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.β15Apr 13, 2026Updated last week
- ProphAsm β a rapid computation of simplitigs directly from k-mer setsβ25Feb 17, 2023Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypesβ31Feb 10, 2026Updated 2 months ago
- Submit slurm sbatch jobs without a scriptβ75Aug 7, 2025Updated 8 months ago
- horizontal pileupβ16Nov 11, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Nextflow Tower CLI toolβ54Updated this week
- Hidden Markov Model based Copy number callerβ20Dec 9, 2025Updated 4 months ago
- Remove human reads from a sequencing runβ48Apr 13, 2026Updated last week
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples froβ¦β13Feb 13, 2023Updated 3 years ago
- Generate an enhanced VCF files from ClinVar XML Full releasesβ15Feb 23, 2026Updated last month
- Assort phage protein sequences into phamilies using MMseqs2β12Dec 16, 2024Updated last year
- Structural variant (SV) analysis toolsβ41Jul 1, 2024Updated last year