telatin / covtobed
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
☆43Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for covtobed
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆50Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- vembrane filters VCF records using python expressions☆57Updated last month
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆28Updated 3 weeks ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated this week
- ☆39Updated 2 months ago
- Deep learning-based structural variant filtering method☆35Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- ☆23Updated 5 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆33Updated 3 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆29Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆27Updated 2 months ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 2 months ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Structural variant caller☆54Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆38Updated 2 years ago
- Structural variant (SV) analysis tools☆36Updated 4 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 5 months ago
- Adapters for trimming☆30Updated 5 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated last month
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago