⛰ covtobed | Convert the coverage track from a BAM file into a BED file
☆44Nov 6, 2025Updated 9 months ago
Alternatives and similar repositories for covtobed
Users that are interested in covtobed are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆67Aug 3, 2026Updated 3 weeks ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 6 years ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- seqfu - Sequece Fastx Utilities☆131Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- Per-base per-nucleotide depth analysis☆151May 9, 2026Updated 3 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆145Aug 24, 2025Updated last year
- BigWig and BAM utilities☆104Mar 26, 2024Updated 2 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆38Oct 14, 2025Updated 10 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 8 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- Variant call adjudication☆17Jun 13, 2024Updated 2 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 25, 2026Updated 3 months ago
- vembrane filters, sorts, and transforms VCF records using python expressions☆70Updated this week
- Get microbial sequence data easier and faster☆29Nov 7, 2019Updated 6 years ago
- SQL-like query language for the SAM/BAM file format☆30Sep 20, 2023Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- structural variant database software☆49Jul 31, 2026Updated 3 weeks ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.☆18Aug 18, 2026Updated last week
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jun 13, 2026Updated 2 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆32Jul 3, 2026Updated last month
- A Nextflow pipeline for running synteny analysis.☆20Aug 2, 2026Updated 3 weeks ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- horizontal pileup☆16Nov 11, 2022Updated 3 years ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Remove human reads from a sequencing run☆52Jun 29, 2026Updated 2 months ago
- Submit slurm sbatch jobs without a script☆75Aug 6, 2026Updated 3 weeks ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆17Jul 21, 2026Updated last month