Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
☆18Nov 9, 2021Updated 4 years ago
Alternatives and similar repositories for hera-t
Users that are interested in hera-t are comparing it to the libraries listed below
Sorting:
- ☆12Feb 19, 2017Updated 9 years ago
- A command line utilty for working with BINSEQ files☆36Feb 28, 2026Updated 3 weeks ago
- software to detect doublets☆97Dec 28, 2024Updated last year
- A simple, intuitive and Efficient single cell binary Data Storage format☆15Oct 10, 2019Updated 6 years ago
- consistent quantification of external RNA-seq data sets☆58Dec 21, 2023Updated 2 years ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated last month
- ☆71Mar 7, 2019Updated 7 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆63Feb 1, 2021Updated 5 years ago
- Analyzing RNA-Seq with approximate likelihood☆26Dec 13, 2020Updated 5 years ago
- sort genomic data☆36Nov 7, 2025Updated 4 months ago
- ☆21Jul 4, 2017Updated 8 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Dec 26, 2022Updated 3 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Feb 7, 2019Updated 7 years ago
- ☆21Dec 26, 2025Updated 2 months ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated 8 months ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Apr 1, 2018Updated 7 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 5 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Feb 14, 2021Updated 5 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Sep 17, 2021Updated 4 years ago
- Image Cytometry Standard file reading and writing.☆18Jan 5, 2026Updated 2 months ago
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 2 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.☆14May 1, 2023Updated 2 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Jun 17, 2022Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- ☆16Sep 8, 2024Updated last year
- Visualizing genetic sequence variation☆13Apr 27, 2020Updated 5 years ago
- python script to programmatically enrich your data using Enrichr API☆12Jul 5, 2017Updated 8 years ago
- ☆15Jun 1, 2019Updated 6 years ago
- Introduction to Python3☆11Oct 26, 2020Updated 5 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆38Aug 16, 2023Updated 2 years ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago