bioturing / hera-tLinks
Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
☆18Updated 4 years ago
Alternatives and similar repositories for hera-t
Users that are interested in hera-t are comparing it to the libraries listed below
Sorting:
- kallisto index tag extractor☆20Updated 6 years ago
- ☆16Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 5 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- ☆21Updated 8 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆30Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 9 years ago
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Updated 4 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Updated 3 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Differential Mutation Analysis☆11Updated 5 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Single cell interactive plotting tools☆24Updated 5 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- ☆22Updated last year
- ☆14Updated 5 months ago
- Visualization tool for temporal clonal evolution.☆18Updated 5 years ago
- Comprehensive Human Expressed SequenceS☆19Updated 6 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 months ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆17Updated last year
- A Julia package for extracting mutation signatures using topic models☆19Updated 3 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago