Rbfinch / grepqLinks
quickly filter fastq files by matching sequences to a set of regex patterns
☆58Updated last month
Alternatives and similar repositories for grepq
Users that are interested in grepq are comparing it to the libraries listed below
Sorting:
- expressions on VCFs☆91Updated 9 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆43Updated last month
- An efficient CLI to extract sequences from the SRA☆120Updated last week
- A better, faster way to count guides in CRISPR screens.☆34Updated 9 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 8 months ago
- fastest GTF/GFF-to-BED converter chilling around☆30Updated 2 weeks ago
- ☆21Updated last year
- gia: Genomic Interval Arithmetic☆66Updated last year
- a lexicographically-based GTF/GFF sorter☆38Updated 9 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- Creating alignment plots from bam files☆107Updated this week
- Snakemake pipeline for benchmarking read mappers☆16Updated 2 years ago
- Grep for FASTQ files☆103Updated last month
- bedtools-like functionality for interval sets in rust☆55Updated 6 months ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆57Updated 2 years ago
- Fast sequencing data quality metrics☆31Updated 4 months ago
- Submit slurm sbatch jobs without a script☆73Updated 6 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆59Updated 11 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 5 months ago
- A high-performance BigWig and BigBed library in Rust☆113Updated 3 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆24Updated this week
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- ☆84Updated 5 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 2 months ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 8 months ago
- ☆27Updated last year
- Quality of life improvements for Bioinformatics in Python.☆31Updated this week
- long read RNA-seq quantification☆103Updated this week