Rbfinch / grepqLinks
quickly filter fastq files by matching sequences to a set of regex patterns
☆56Updated this week
Alternatives and similar repositories for grepq
Users that are interested in grepq are comparing it to the libraries listed below
Sorting:
- expressions on VCFs☆87Updated 7 months ago
- An efficient CLI to extract sequences from the SRA☆118Updated 3 weeks ago
- ☆21Updated 11 months ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆39Updated 6 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 6 months ago
- Fast sequencing data quality metrics☆31Updated 3 months ago
- Toolkit for manipulating FASTA and SAM files☆20Updated last year
- A Rust library and command line tool for working with genomic ranges and their data.☆100Updated last year
- gia: Genomic Interval Arithmetic☆63Updated last year
- fastest GTF/GFF-to-BED converter chilling around☆30Updated 2 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last month
- Snakemake workflow management system and CLI generation tool☆63Updated last month
- Grep for FASTQ files☆103Updated 2 weeks ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated last week
- long read RNA-seq quantification☆93Updated last month
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- bedtools-like functionality for interval sets in rust☆55Updated 4 months ago
- A better, faster way to count guides in CRISPR screens.☆34Updated 8 months ago
- Submit slurm sbatch jobs without a script☆71Updated 4 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- Creating alignment plots from bam files☆69Updated 3 weeks ago
- a lexicographically-based GTF/GFF sorter☆35Updated 7 months ago
- ☆27Updated 10 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆38Updated 2 months ago
- ☆83Updated 3 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated last week
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Updated last year
- A high-performance BigWig and BigBed library in Rust☆108Updated last month