Rbfinch / grepq
quickly filter fastq files by matching sequences to a set of regex patterns
☆52Updated 3 weeks ago
Alternatives and similar repositories for grepq:
Users that are interested in grepq are comparing it to the libraries listed below
- expressions on VCFs☆83Updated this week
- Toolkit for manipulating FASTA and SAM files☆18Updated last year
- ☆21Updated 3 months ago
- fastest GTF/GFF-to-BED converter chilling around☆25Updated 3 months ago
- gia: Genomic Interval Arithmetic☆62Updated 8 months ago
- Alignment-based gene expression quantification☆27Updated 2 weeks ago
- bedtools-like functionality for interval sets in rust☆51Updated 8 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- an API for intersections of genomic data☆75Updated last week
- Creating alignment plots from bam files☆56Updated last week
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 6 months ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆27Updated last month
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆19Updated last week
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆36Updated 3 weeks ago
- a lexicographically-based GTF/GFF sorter☆33Updated 8 months ago
- A high-performance BigWig and BigBed library in Rust☆81Updated 3 weeks ago
- Rust wrapper for the next generation (still currently in C++)☆24Updated 2 months ago
- Submit slurm sbatch jobs without a script☆68Updated 7 months ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated 4 months ago
- ☆46Updated 2 years ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆49Updated last week
- Fast sequencing data quality metrics☆26Updated 2 weeks ago
- Add biological annotations to variants in a given VCF file.☆30Updated 3 years ago
- ☆25Updated 2 months ago
- long read RNA-seq quantification☆82Updated last week
- Fast FASTQ sample demultiplexing in Rust.☆62Updated last week
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆34Updated 2 months ago
- A Similarity-Guided Alignment Algorithm☆26Updated last month
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year