Catalogue of pairwise alignment algorithms and benchmarks
☆25Jan 6, 2026Updated 3 months ago
Alternatives and similar repositories for pairwise-alignment
Users that are interested in pairwise-alignment are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 6 months ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 11 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- ☆46Nov 21, 2025Updated 4 months ago
- ☆19May 10, 2023Updated 2 years ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 5 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- ☆21Dec 26, 2025Updated 3 months ago
- ☆23Sep 9, 2025Updated 7 months ago
- implicit pangenome graph☆98Updated this week
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Fast interval intersection library☆44Aug 20, 2025Updated 7 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 6 months ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 7 months ago
- Wavefront alignment algorithm (WFA) in Golang☆31Jul 26, 2025Updated 8 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- ☆19Feb 15, 2025Updated last year
- bioinformatics toolkit in rust☆101Feb 15, 2026Updated last month
- Benchmarking pairwise aligners☆37Feb 8, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated last month
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- AlfaPang builds pangenome graphs without alignments or references.☆15Nov 7, 2025Updated 5 months ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆38Dec 30, 2025Updated 3 months ago
- Fast and exact gap-affine partial order alignment☆61Mar 22, 2026Updated 2 weeks ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 10 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 10 months ago
- plane sweep filtering genome alignments☆23Mar 30, 2026Updated last week
- ☆22Jul 28, 2022Updated 3 years ago
- A battery of methylation tools for PacBio HiFi reads☆51Dec 2, 2025Updated 4 months ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 8 months ago