jdidion / pairwise-alignmentLinks
Catalogue of pairwise alignment algorithms and benchmarks
☆25Updated last year
Alternatives and similar repositories for pairwise-alignment
Users that are interested in pairwise-alignment are comparing it to the libraries listed below
Sorting:
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 7 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- convert CHAIN format to PAF format☆14Updated 9 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 11 months ago
- Variant call adjudication☆16Updated last year
- A minimap2 implementation with binseq inputs☆16Updated last month
- ☆21Updated 9 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆32Updated 10 months ago
- Tool for exploring sequence alignment algorithms☆13Updated last year
- Shared k-mer content between two genomes☆18Updated 2 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 11 months ago
- Genome browser hub for the T2T genomes and resources☆23Updated last week
- ☆14Updated 2 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 2 weeks ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated 9 months ago
- ☆18Updated 7 months ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated 3 weeks ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 5 months ago
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆21Updated last week
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated last month
- ☆21Updated 8 months ago
- sunburst plots for taxonomy - working to update Krona☆40Updated 3 weeks ago
- Generate random test data for bioinformatics☆26Updated last year
- gia: Genomic Interval Arithmetic☆65Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆30Updated last month
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 3 months ago