Catalogue of pairwise alignment algorithms and benchmarks
☆26Jan 6, 2026Updated 6 months ago
Alternatives and similar repositories for pairwise-alignment
Users that are interested in pairwise-alignment are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- base-level dotplots from PAF alignments☆35Sep 18, 2025Updated 10 months ago
- plane sweep filtering genome alignments☆24May 23, 2026Updated last month
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated last month
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated last week
- ☆50Jul 2, 2026Updated 2 weeks ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- ☆19May 10, 2023Updated 3 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- ☆23Jul 8, 2026Updated last week
- ☆21Dec 26, 2025Updated 6 months ago
- An extensible and performant aligner and read mapper☆98Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 8 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆44Sep 29, 2025Updated 9 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Fast interval intersection library☆45Updated this week
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated last week
- gemsparcl 💎✨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic life☆16Jun 16, 2026Updated last month
- ☆26Jun 16, 2026Updated last month
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 10, 2026Updated last week
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Jan 22, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 10 months ago
- bioinformatics toolkit in rust☆107Updated this week
- ☆21Feb 15, 2025Updated last year
- Benchmarking pairwise aligners☆37Feb 8, 2025Updated last year
- Variant Calling for the HPRC2☆16May 26, 2026Updated last month
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- implicit pangenome graph☆109Jul 8, 2026Updated last week
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 6 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆69Apr 25, 2026Updated 2 months ago
- A multiscale pangenome browser☆30Updated this week
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆45Updated this week
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year