jdidion / pairwise-alignment
Catalogue of pairwise alignment algorithms and benchmarks
☆25Updated 8 months ago
Alternatives and similar repositories for pairwise-alignment:
Users that are interested in pairwise-alignment are comparing it to the libraries listed below
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Toolkit for manipulating FASTA and SAM files☆18Updated last year
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆15Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 3 months ago
- Variant call adjudication☆16Updated 10 months ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆15Updated 4 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆38Updated 6 months ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 2 years ago
- GBWT-based handle graph☆31Updated last month
- Hidden Markov Model based Copy number caller☆20Updated 6 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Construct a Physical Map from Linked Reads☆18Updated last year
- Shared k-mer content between two genomes☆17Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆34Updated 2 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 6 months ago
- ☆22Updated 4 months ago
- Convert HAL to VG☆22Updated 8 months ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated 4 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆30Updated 3 months ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- Iterate over minimizers of a DNA sequence☆28Updated 9 months ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆37Updated last year
- Pipeline for the identification of (coding) gene structures in draft genomes.☆26Updated 11 months ago
- ☆21Updated 3 months ago