jdidion / pairwise-alignmentLinks
Catalogue of pairwise alignment algorithms and benchmarks
☆26Updated 11 months ago
Alternatives and similar repositories for pairwise-alignment
Users that are interested in pairwise-alignment are comparing it to the libraries listed below
Sorting:
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 5 months ago
- Variant call adjudication☆16Updated last year
- Shared k-mer content between two genomes☆18Updated 2 years ago
- convert CHAIN format to PAF format☆14Updated 7 months ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- gia: Genomic Interval Arithmetic☆65Updated 10 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 8 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 5 months ago
- Genome browser hub for the T2T genomes and resources☆23Updated 3 weeks ago
- Viral genome coverage evaluation for metagenomic diagnostics☆28Updated 7 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- ☆18Updated 5 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆20Updated last week
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 8 months ago
- A minimap2 implementation with binseq inputs☆14Updated 2 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- ☆28Updated 3 months ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated 5 months ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago
- drunk on perbase pileups and lua expressions☆19Updated 2 months ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 9 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 9 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 3 months ago
- k-mer similarity analysis pipeline☆21Updated last week
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 9 months ago