Bitpacked sequence trait and implementation
☆19Aug 19, 2026Updated last week
Alternatives and similar repositories for packed-seq
Users that are interested in packed-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last week
- 2bit file format implementation in Rust☆16Mar 27, 2026Updated 5 months ago
- A SIMD-accelerated library to compute random minimizers☆46Updated this week
- Bit-packed and well-typed biological sequences☆46Jul 26, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Updated this week
- Parallel Construction of Suffix Arrays in Rust☆26Updated this week
- Fast sequence distance estimates☆31Updated this week
- kmer-counter based on kache-hash☆16Updated this week
- k-mers and the like☆23Aug 9, 2026Updated 3 weeks ago
- ☆27Jun 16, 2026Updated 2 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated last month
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆48Aug 19, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 5 months ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54Jun 22, 2026Updated 2 months ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Fast approximate string searching☆164Aug 11, 2026Updated 2 weeks ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last month
- Ultra-rapid detection of viral variants directly from sequencing data☆47Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rust bindings to minimap2 library☆113May 3, 2026Updated 3 months ago
- ☆17Apr 6, 2023Updated 3 years ago
- FASTA and FASTQ parsing in Rust☆85Mar 14, 2025Updated last year
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆28Updated this week
- An extensible and performant aligner and read mapper☆103Jul 27, 2026Updated last month
- ☆20Jan 13, 2026Updated 7 months ago
- A small and fast FM-Index for Rust☆44Feb 1, 2026Updated 6 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated last month
- A beautiful tree 🌳 with convenient, efficient, parallelizable growth, mutation and traversal features.☆17Jan 25, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆15Apr 1, 2026Updated 4 months ago
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆31Jan 22, 2026Updated 7 months ago
- Genome size estimation from long read overlaps☆91Updated this week
- ☆35Aug 11, 2026Updated 2 weeks ago
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆15Jun 17, 2026Updated 2 months ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Rust in bioinformatics and computational biology☆19Oct 22, 2022Updated 3 years ago