WGLab / AmpBinner
A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data
☆10Updated 3 months ago
Alternatives and similar repositories for AmpBinner:
Users that are interested in AmpBinner are comparing it to the libraries listed below
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Gene copy number prediction from k-mer frequencies☆12Updated 7 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆12Updated 2 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- defusion☆14Updated 3 years ago
- Analyse RNA feature distributions.☆15Updated 3 months ago
- ☆14Updated last year
- ☆16Updated 2 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated this week
- End-guided RNA assembler☆15Updated 4 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- ☆13Updated last year
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆21Updated this week
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- ☆20Updated 5 months ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆20Updated last year
- A method for measuring chromosome-specific telomere length from long reads☆21Updated 10 months ago
- Phasing reads with secondary alignments☆17Updated 3 months ago
- CLI to automate Nextflow pipeline testing☆12Updated 2 weeks ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated last month
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 3 months ago
- isoCirc☆10Updated last year
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆10Updated 3 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last week
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆15Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- ☆13Updated 9 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 6 months ago