WGLab / AmpBinnerLinks
A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data
☆10Updated 7 months ago
Alternatives and similar repositories for AmpBinner
Users that are interested in AmpBinner are comparing it to the libraries listed below
Sorting:
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- ☆20Updated 8 months ago
- Gene copy number prediction from k-mer frequencies☆13Updated 10 months ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 6 months ago
- End-guided RNA assembler☆15Updated 2 months ago
- ☆9Updated 3 years ago
- Analyse RNA feature distributions.☆16Updated 6 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- ☆14Updated last year
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆10Updated 2 weeks ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 months ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- ☆20Updated last year
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆17Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- maze: match visualizer☆9Updated 3 years ago
- ☆13Updated 2 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- TreeBeST: Tree Building guided by Species Tree☆14Updated 14 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last week
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago