Alternatives and similar repositories for AmpBinner

Users that are interested in AmpBinner are comparing it to the libraries listed below

• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated 2 months ago
• bioinfo-ut / GeneToCN
  Gene copy number prediction from k-mer frequencies
  ☆14Updated last year
• marschall-lab / strand-seq-graph-phasing
  ☆13Updated 8 months ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• RitchieLabIGH / iMOKA
  interactive Multi Objective K-mer Analysis
  ☆23Updated 2 years ago
• ktan8 / nanopore_telomere_basecall
  ☆15Updated 2 years ago
• ETCHING-team / ETCHING
  Ultra-fast, high-performing structural variation (SV) detector
  ☆23Updated 2 years ago
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆31Updated 5 years ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆20Updated 3 years ago
• cmdcolin / mafviewer
  A JBrowse plugin to view multiple alignment format (MAF) files
  ☆27Updated 2 years ago
• lh3 / unicall
  A wrapper for calling small variants from human germline high-coverage single-sample Illumina data
  ☆14Updated 6 years ago
• jts / mbtools
  ☆14Updated 2 years ago
• aakechin / cutPrimers
  curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
  ☆17Updated 8 months ago
• bahlolab / superSTR
  A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.
  ☆18Updated last week
• RacconC / gtftools
  ☆16Updated 2 years ago
• GP2code / CNV-Finder
  Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.
  ☆12Updated 7 months ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated last month
• LankyCyril / edgecase
  A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…
  ☆16Updated 2 years ago
• makovalab-psu / T2T_primate_XY
  ☆12Updated last year
• gjun / muCNV
  ☆20Updated 2 years ago
• huangnengCSU / NanoSNP
  A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
  ☆21Updated 3 years ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 4 years ago
• CAST-genomics / haptools
  Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis
  ☆24Updated last month
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated last month
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆12Updated last month
• CMU-SAFARI / FastRemap
  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…
  ☆26Updated 3 years ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆18Updated last year
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆18Updated 5 years ago
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 8 years ago
• mcfrith / dnarrange
  ☆16Updated last year