nf-core / fastquorumLinks
Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
☆24Updated last week
Alternatives and similar repositories for fastquorum
Users that are interested in fastquorum are comparing it to the libraries listed below
Sorting:
- Automatically source dotenv files into your Nextflow scope☆9Updated 3 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated last month
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 months ago
- Customer workshop materials☆18Updated 2 years ago
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated last month
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 6 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Nascent Transcription Processing Pipeline☆20Updated 3 weeks ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 10 months ago
- Fast sequencing data quality metrics☆27Updated 2 months ago
- QC pipeline to inspect your sequences☆14Updated 2 weeks ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- v2.x of the microassembly based somatic variant caller☆24Updated 3 weeks ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆21Updated this week
- k-mer similarity analysis pipeline☆22Updated last month
- Unfazed by genomic variant phasing☆27Updated last year
- ☆12Updated 3 years ago
- bedtools-like functionality for interval sets in rust☆52Updated this week
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- Quality of life improvements for Bioinformatics in Python.☆30Updated last week
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 months ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated 2 years ago
- Structural variant pipeline☆17Updated 5 years ago
- Fast FASTQ sample demultiplexing in Rust.☆63Updated 2 months ago