nf-core / fastquorumLinks
Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
☆23Updated 2 weeks ago
Alternatives and similar repositories for fastquorum
Users that are interested in fastquorum are comparing it to the libraries listed below
Sorting:
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated this week
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- fastest GTF/GFF-to-BED converter chilling around☆25Updated 3 weeks ago
- a lexicographically-based GTF/GFF sorter☆34Updated last month
- A VSCode extension pack for nf-core developers.☆15Updated 2 months ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆20Updated this week
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Nascent Transcription Processing Pipeline☆19Updated last week
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Updated 4 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 8 months ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated last month
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Customer workshop materials☆18Updated 2 years ago
- Fast sequencing data quality metrics☆26Updated last week
- k-mer similarity analysis pipeline☆21Updated last month
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 7 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated last month
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆12Updated last year
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆31Updated 4 months ago
- QC pipeline to inspect your sequences☆12Updated this week
- Fast FASTQ sample demultiplexing in Rust.☆62Updated last week
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Updated last year