Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
☆29Sep 16, 2026Updated this week
Alternatives and similar repositories for fastquorum
Users that are interested in fastquorum are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36Aug 10, 2026Updated last month
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 5 months ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jul 28, 2026Updated last month
- Nascent Transcription Processing Pipeline☆25Sep 1, 2026Updated 3 weeks ago
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆19Jul 28, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Sep 11, 2026Updated last week
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Sep 11, 2026Updated last week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆57Aug 24, 2026Updated 3 weeks ago
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆64Sep 11, 2026Updated last week
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- Generate beautiful API documentation for Nextflow pipelines☆19Aug 9, 2026Updated last month
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆82Sep 11, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Demultiplexing pipeline for sequencing data☆60Updated this week
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆16Updated this week
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆67Sep 1, 2026Updated 3 weeks ago
- Scripts and code for Kākāpō genomic data☆14Sep 4, 2023Updated 3 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆27Jul 30, 2026Updated last month
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆28Updated this week
- nf-test utility functions☆13Updated this week
- Linter rules for Nextflow DSL scripts☆35May 25, 2026Updated 3 months ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆41Sep 11, 2026Updated last week
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- v2.x of the microassembly based somatic variant caller☆29Sep 9, 2026Updated last week
- Nextflow language support for Visual Studio Editor☆38Updated this week
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆61Sep 11, 2026Updated last week
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- High-performance UMI tools for NGS data analysis☆56Updated this week
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆18Jul 15, 2026Updated 2 months ago
- Customer workshop materials☆19May 13, 2026Updated 4 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆121Updated this week
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated 5 months ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated 2 years ago
- The Nextflow language server☆31Updated this week