k-mers and the like
☆23Jul 27, 2026Updated this week
Alternatives and similar repositories for oxli
Users that are interested in oxli are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De novo genome assembly for long reads using an overlap graph☆22Jul 3, 2026Updated 3 weeks ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Updated this week
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated 2 weeks ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆55Jun 10, 2026Updated last month
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bitpacked sequence trait and implementation☆19Jul 7, 2026Updated 3 weeks ago
- Remove human reads from a sequencing run☆51Jun 29, 2026Updated last month
- Variant call verification☆19May 12, 2025Updated last year
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆21Nov 24, 2024Updated last year
- Rust bindings to minimap2 library☆113May 3, 2026Updated 2 months ago
- An efficient CLI to extract sequences from the SRA☆124Jun 12, 2026Updated last month
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆45Jul 16, 2026Updated last week
- Bit-packed and well-typed biological sequences☆46Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆259May 13, 2026Updated 2 months ago
- Fasten toolkit, for streaming operations on fastq files☆82Oct 24, 2025Updated 9 months ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆28Updated this week
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 6 months ago
- plane sweep filtering genome alignments☆24Updated this week
- Fast FASTX parsing and k-mer methods in Rust☆213Jun 22, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54Jun 22, 2026Updated last month
- A versatile toolkit for k-mers with taxonomic information☆84Aug 28, 2025Updated 11 months ago
- µbinfie blog☆19Jul 21, 2025Updated last year
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆33Aug 26, 2024Updated last year
- Simple and transparent support for compressed files.☆81Updated this week
- gia: Genomic Interval Arithmetic☆67Aug 21, 2024Updated last year
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Jul 14, 2026Updated 2 weeks ago
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A new high-resolution long-read metagenome assembler for even noisy reads☆161Jul 3, 2026Updated 3 weeks ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆221Jul 16, 2026Updated last week
- A novel method for sequence similarity estimation☆28Mar 23, 2024Updated 2 years ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated 5 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21May 31, 2026Updated last month
- Recombination-free trees☆72Updated this week
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year