k-mers and the like
☆22Oct 18, 2026Updated 2 weeks ago
Alternatives and similar repositories for oxli
Users that are interested in oxli are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De novo genome assembly for long reads using an overlap graph☆26Updated this week
- NCBI Taxonomy History Browser☆10May 7, 2026Updated 5 months ago
- Tearing through FASTA/Q sequences☆46Oct 29, 2026Updated last week
- A decoder that automatically detects compression format (gzip, bzip2, xz, zstd) via external crates. Includes encoder as well.☆13Jan 8, 2026Updated 9 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Variant call verification☆19May 12, 2025Updated last year
- Exact, SIMD-accelerated sequence alignment (Smith-Waterman, Needleman-Wunsch, semi-global, overlap)☆12Aug 10, 2026Updated 2 months ago
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated last month
- An efficient CLI to extract sequences from the SRA☆132Jun 12, 2026Updated 4 months ago
- Bitpacked sequence trait and implementation☆19Oct 26, 2026Updated last week
- Split k-mer analysis – version 2☆110Oct 20, 2026Updated 2 weeks ago
- 🐪Classification through yAML Heuristic Mapping Protocol 🐪☆10Updated this week
- software to identify primers that can distinguish genomes☆20Aug 31, 2026Updated 2 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆54Jun 10, 2026Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- In-browser tools for bacterial genome analysis 🦅☆12Oct 21, 2026Updated 2 weeks ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- bedpull - Pull the query sequence from bam or fasta references using a bed file☆16Sep 24, 2026Updated last month
- Bit-packed and well-typed biological sequences☆46Sep 22, 2026Updated last month
- Fasten toolkit, for streaming operations on fastq files☆85Oct 12, 2026Updated 3 weeks ago
- A SIMD-accelerated library to compute random minimizers☆49Oct 26, 2026Updated last week
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated 2 years ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆51Oct 22, 2026Updated 2 weeks ago
- Simple and transparent support for compressed files.☆81Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Compute hash digests for DNA sequences in a FASTA file☆13May 31, 2026Updated 5 months ago
- Rust bindings to minimap2 library☆114Updated this week
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆17Oct 15, 2026Updated 3 weeks ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆22Nov 24, 2024Updated last year
- How many distinct k-mers are there in a sequence?☆11Oct 26, 2026Updated last week
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54Updated this week
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tool intended to pull out sequences and annotations between insertion sites specified by the user.☆15Apr 10, 2026Updated 6 months ago
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆31Oct 30, 2026Updated last week
- Remove human reads from a sequencing run☆54Jun 29, 2026Updated 4 months ago
- THRESHER is a framework that replaces fixed cutoffs with data-driven phylothresholds - the SNP thresholds corrected for phylogenetic topo…☆14Oct 17, 2026Updated 2 weeks ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- Population analysis PIPEline 🛠🧬☆28Mar 2, 2026Updated 8 months ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Oct 8, 2026Updated 3 weeks ago