oxli-bio / oxliLinks
k-mers and the like
☆22Updated last week
Alternatives and similar repositories for oxli
Users that are interested in oxli are comparing it to the libraries listed below
Sorting:
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated last year
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆39Updated 3 months ago
- Variant call verification☆16Updated 7 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Updated last year
- Basecalling configuration prediction through FASTQ files☆32Updated last month
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Genome size estimation from long read overlaps☆79Updated last month
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated last week
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 4 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆28Updated 4 months ago
- Fast sequence distance estimates☆25Updated 2 weeks ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 5 months ago
- A taxonomic classifier for shotgun metagenomics reads☆11Updated 9 months ago
- Visualize microbial evolution at the SNP level!☆15Updated 4 months ago
- A Nextflow pipeline for genome and pan-genome annotation☆15Updated 2 months ago
- A minimap2 implementation with binseq inputs☆17Updated 3 weeks ago
- ☆19Updated 10 months ago
- Remove human reads from a sequencing run☆47Updated 3 weeks ago
- Generate random test data for bioinformatics☆27Updated last year
- Drug Resistance Prediction with Reference Graphs☆21Updated 2 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Fast and exact gap-affine partial order alignment☆57Updated last month
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 11 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆18Updated 2 weeks ago