ArcInstitute / mmrLinks
A minimap2 implementation with binseq inputs
☆16Updated 3 weeks ago
Alternatives and similar repositories for mmr
Users that are interested in mmr are comparing it to the libraries listed below
Sorting:
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 2 months ago
- k-mers and the like☆22Updated 3 weeks ago
- ☆19Updated 9 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated 2 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆31Updated last month
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 3 months ago
- JTK -- a regional diploid genome assembler☆25Updated last year
- Extracts subgraphs or components from a graph in GFA format☆25Updated last year
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆16Updated this week
- Hierarchical binned indexed data store for on-disk genomic data.☆13Updated 10 months ago
- Rust wrapper for the next generation (still currently in C++)☆28Updated 4 months ago
- ☆17Updated 9 months ago
- Singular Genomics Demultiplexing Tool☆16Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- ☆14Updated 3 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 3 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- A tool for sniffing out the differences in vari-Ants☆32Updated 3 weeks ago
- Hidden Markov Model based Copy number caller☆20Updated last year
- ☆21Updated 11 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆24Updated last year
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Updated 7 months ago
- ☆12Updated 5 months ago
- Genome browser hub for the T2T genomes and resources☆25Updated last month