ArcInstitute / mmrLinks
A minimap2 implementation with binseq inputs
☆14Updated last month
Alternatives and similar repositories for mmr
Users that are interested in mmr are comparing it to the libraries listed below
Sorting:
- ☆18Updated 4 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 9 months ago
- k-mers and the like☆22Updated last week
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 5 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 9 months ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 7 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 4 months ago
- Singular Genomics Demultiplexing Tool☆16Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Rust wrapper for the next generation (still currently in C++)☆26Updated 3 weeks ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated 4 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆11Updated 9 months ago
- JTK -- a regional diploid genome assembler☆24Updated 8 months ago
- ☆12Updated last month
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- The python binding for D4 format☆16Updated 3 years ago
- ☆22Updated 6 months ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆11Updated last month
- Variant call verification☆16Updated last month
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 7 months ago
- Iterate over minimizers of a DNA sequence☆29Updated 11 months ago
- Variant call adjudication☆16Updated last year