A minimap2 implementation with binseq inputs
☆18Dec 11, 2025Updated 10 months ago
Alternatives and similar repositories for mmr
Users that are interested in mmr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A command line utilty for working with BINSEQ files☆51Sep 23, 2026Updated last month
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- A high efficiency binary format for sequencing data☆111Aug 26, 2026Updated 2 months ago
- Tearing through FASTA/Q sequences☆42Updated this week
- How many distinct k-mers are there in a sequence?☆11Oct 26, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Exact, SIMD-accelerated sequence alignment (Smith-Waterman, Needleman-Wunsch, semi-global, overlap)☆12Aug 10, 2026Updated 2 months ago
- A Rust implementation of SSHash☆20Oct 19, 2026Updated 2 weeks ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Fast and haplotype-aware assembler☆16Oct 20, 2026Updated last week
- A decoder that automatically detects compression format (gzip, bzip2, xz, zstd) via external crates. Includes encoder as well.☆13Jan 8, 2026Updated 9 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated 2 years ago
- Efficient querying of biological databases☆45Oct 27, 2025Updated last year
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- ☆15Oct 22, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Oct 27, 2026Updated last week
- ☆53Sep 20, 2022Updated 4 years ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 7 months ago
- Fast long-read RNA-seq mapping to a transcriptome with locally consistent parsing☆22Updated this week
- Fast and exact gap-affine partial order alignment☆71Oct 22, 2026Updated last week
- Rust bindings to minimap2 library☆114Sep 14, 2026Updated last month
- Compute hash digests for DNA sequences in a FASTA file☆13May 31, 2026Updated 5 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆17Oct 15, 2026Updated 2 weeks ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆37May 28, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 5 years ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- Simple and transparent support for compressed files.☆81Sep 23, 2026Updated last month
- ☆29Aug 15, 2026Updated 2 months ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated last year
- ☆28Updated this week
- A rust-native port of wfa2lib☆15Aug 1, 2026Updated 3 months ago
- An efficient CLI to extract sequences from the SRA☆132Jun 12, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 4 years ago
- Implementation of the u-index☆12Jul 19, 2025Updated last year
- Fast sequence distance estimates☆35Updated this week
- Bit-packed and well-typed biological sequences☆46Sep 22, 2026Updated last month
- bedtools-like functionality for interval sets in rust☆56Aug 5, 2025Updated last year
- Fasten toolkit, for streaming operations on fastq files☆84Oct 12, 2026Updated 3 weeks ago