ArcInstitute / mmrLinks
A minimap2 implementation with binseq inputs
☆17Updated 2 weeks ago
Alternatives and similar repositories for mmr
Users that are interested in mmr are comparing it to the libraries listed below
Sorting:
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 4 months ago
- k-mers and the like☆22Updated 2 weeks ago
- A FASTA/FASTQ format parser library☆20Updated last year
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated 4 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Updated 11 months ago
- ☆19Updated 10 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆39Updated 2 weeks ago
- Singular Genomics Demultiplexing Tool☆16Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- Rust wrapper for the next generation (still currently in C++)☆29Updated 5 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 5 months ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆17Updated last week
- Fast sequence distance estimates☆24Updated last week
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆27Updated last week
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated last month
- A tool for sniffing out the differences in vari-Ants☆34Updated 3 weeks ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 4 months ago
- ☆14Updated 4 months ago
- Variant call verification☆16Updated 7 months ago
- JTK -- a regional diploid genome assembler☆25Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 3 weeks ago
- The python binding for D4 format☆16Updated 4 years ago
- A novel method for sequence similarity estimation☆28Updated last year
- Iterate over minimizers of a DNA sequence☆31Updated last year