A pipeline for scRNA analysis under HPC
☆11Jul 15, 2024Updated last year
Alternatives and similar repositories for scrnabox
Users that are interested in scrnabox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 3 months ago
- Human and mouse genome assemblies customized for rDNA mapping☆12Mar 7, 2025Updated last year
- Docker container for genomics analyses in R.☆28Apr 29, 2024Updated 2 years ago
- A collection of tools to process single-cell omics datasets.☆52Apr 23, 2026Updated last month
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆22Mar 29, 2018Updated 8 years ago
- iterative clustering pipeline of big single cell datasets.☆39Sep 5, 2025Updated 8 months ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆25Jun 14, 2024Updated last year
- ☆10May 14, 2025Updated last year
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 11 months ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 8 months ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆31Aug 26, 2024Updated last year
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Workflow for single-cell RNA-seq analysis using Seurat☆53Jan 14, 2024Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- iCount, protein-RNA interaction analytics☆23Dec 14, 2021Updated 4 years ago
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 2 years ago
- A whole-genome and alignment-free prokaryotic phylogeny tool☆23Mar 9, 2025Updated last year
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- Bizard: A Biomedical Visualization Atlas. https://openbiox.github.io/Bizard/☆60May 22, 2026Updated last week
- Basecalling configuration prediction through FASTQ files☆33Mar 17, 2026Updated 2 months ago
- ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.☆26May 2, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Calculate assocations between genes and traits☆31Mar 10, 2025Updated last year
- Process m6A/MeRIP-seq data in a single or batch job mode☆21Apr 28, 2020Updated 6 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆15Apr 25, 2025Updated last year
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Apr 16, 2026Updated last month
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- ☆29Sep 28, 2021Updated 4 years ago
- Finding CpG islands in genome sequences☆13Jul 26, 2017Updated 8 years ago
- ☆43Nov 26, 2025Updated 6 months ago
- This is code for running Orthofinder -> PAML☆13Jul 27, 2016Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 5 years ago
- R packages☆13May 22, 2026Updated last week
- Educational Notes on Molecular Modeling☆13Nov 19, 2020Updated 5 years ago
- ☆14Oct 27, 2025Updated 7 months ago
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated last year
- A nextflow pipeline for performing bacterial RNA-Seq data analysis.☆13Apr 26, 2026Updated last month
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 2 years ago