neurobioinfo / scrnaboxLinks
A pipeline for scRNA analysis under HPC
☆10Updated last year
Alternatives and similar repositories for scrnabox
Users that are interested in scrnabox are comparing it to the libraries listed below
Sorting:
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last week
- Two pass alignment for long reads☆22Updated 4 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated 5 months ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 3 months ago
- ☆17Updated last year
- Bedfile perturbation tool☆17Updated 2 months ago
- Visualization tool for temporal clonal evolution.☆18Updated 5 years ago
- Example scripts for analyzing CUT&RUN datasets☆13Updated 7 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆26Updated last week
- Nascent Transcription Processing Pipeline☆20Updated 2 weeks ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆29Updated 5 months ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 2 months ago
- R package for DNA methylation analysis☆19Updated last year
- ☆18Updated 4 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- Docker container for genomics analyses in R.☆26Updated last year
- Telomerecat: The telomere computational analysis tool☆21Updated 4 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- FunctionaL Omics Processing platform☆13Updated last year
- ☆22Updated 10 months ago
- ☆14Updated 6 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last week
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Updated 7 months ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago