A pipeline for scRNA analysis under HPC
☆11Jul 15, 2024Updated last year
Alternatives and similar repositories for scrnabox
Users that are interested in scrnabox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated last month
- Human and mouse genome assemblies customized for rDNA mapping☆12Mar 7, 2025Updated last year
- Docker container for genomics analyses in R.☆27Apr 29, 2024Updated last year
- A collection of tools to process single-cell omics datasets.☆51May 29, 2025Updated 10 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆22Mar 29, 2018Updated 8 years ago
- iterative clustering pipeline of big single cell datasets.☆37Sep 5, 2025Updated 6 months ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆23Jun 14, 2024Updated last year
- ☆10May 14, 2025Updated 10 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Aug 26, 2024Updated last year
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 9 months ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 6 months ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Workflow for single-cell RNA-seq analysis using Seurat☆49Jan 14, 2024Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Bizard: A Biomedical Visualization Atlas. https://openbiox.github.io/Bizard/☆38Updated this week
- iCount, protein-RNA interaction analytics☆23Dec 14, 2021Updated 4 years ago
- A whole-genome and alignment-free prokaryotic phylogeny tool☆23Mar 9, 2025Updated last year
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated 11 months ago
- Basecalling configuration prediction through FASTQ files☆33Mar 17, 2026Updated last week
- ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.☆24Mar 16, 2026Updated last week
- Calculate assocations between genes and traits☆29Mar 10, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Process m6A/MeRIP-seq data in a single or batch job mode☆21Apr 28, 2020Updated 5 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆15Apr 25, 2025Updated 11 months ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Jan 16, 2025Updated last year
- ☆29Sep 28, 2021Updated 4 years ago
- Finding CpG islands in genome sequences☆13Jul 26, 2017Updated 8 years ago
- ☆38Nov 26, 2025Updated 4 months ago
- This is code for running Orthofinder -> PAML☆12Jul 27, 2016Updated 9 years ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R packages☆13Updated this week
- Educational Notes on Molecular Modeling☆13Nov 19, 2020Updated 5 years ago
- ☆14Oct 27, 2025Updated 5 months ago
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated 10 months ago
- A nextflow pipeline for performing bacterial RNA-Seq data analysis.☆12Oct 14, 2025Updated 5 months ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 2 years ago
- ☆17Jul 27, 2023Updated 2 years ago