A python tool to detect internal tandem duplication with robust variant allele frequency estimation
☆12Feb 3, 2026Updated 3 months ago
Alternatives and similar repositories for ScanITD
Users that are interested in ScanITD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software for FLT3-ITD detection and MRD monitoring assay☆14Jul 22, 2022Updated 3 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Dec 10, 2019Updated 6 years ago
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Apr 10, 2026Updated last month
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 3 years ago
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- Indel caller for DNA-seq or RNA-seq☆16Aug 8, 2023Updated 2 years ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- visualize CNV data from targeted capture based sequencing data☆35May 10, 2021Updated 5 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Jan 4, 2024Updated 2 years ago
- Molecular Oncology Almanac, a clinical interpretation algorithm paired with a novel underlying knowledge base for precision cancer medici…☆39Updated this week
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- ☆11May 21, 2024Updated 2 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆26Mar 9, 2026Updated 2 months ago
- Lui is a lua MVVM framework based on IUP gui library and Lockout.lua (Knockout port)☆11May 5, 2013Updated 13 years ago
- python plotly Circos from VCF☆42Jun 20, 2024Updated last year
- Transposable element polymorphism identification☆34Jul 22, 2020Updated 5 years ago
- Tumor Mutational Burden☆66Mar 17, 2026Updated 2 months ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆20Sep 2, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆31Nov 25, 2024Updated last year
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- Transform the macOS CLI into a fresh GNU/Linux CLI experience by installing missing GNU programs, updating outdated GNU programs, replaci…☆15Jan 22, 2026Updated 4 months ago
- 🛜 A lightweight immune repertoire browser☆27Dec 10, 2019Updated 6 years ago
- Clinical interpretation of somatic mutations in cancer☆52Feb 20, 2025Updated last year
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- Lua module to emulate a Lua Terminal in a IUP toolkit textbox to easily embed in any IUP application☆16Jul 29, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A port of biocommons/hgvs to the Rust programming language☆18May 11, 2026Updated last week
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- for detecting internal tandem duplication from genome sequence data.☆12May 16, 2019Updated 7 years ago
- Set of useful lua functions for manipulating tables.☆12Jan 22, 2020Updated 6 years ago
- Analysis of sequencing error profile for long read data.☆13Mar 30, 2023Updated 3 years ago
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated last month