ylab-hi / ScanITD
A python tool to detect internal tandem duplication with robust variant allele frequency estimation
☆11Updated 3 weeks ago
Alternatives and similar repositories for ScanITD:
Users that are interested in ScanITD are comparing it to the libraries listed below
- ☆14Updated 7 months ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆10Updated 3 years ago
- Enabling differential allele-specific analysis☆11Updated last month
- ☆11Updated 2 years ago
- Automated Detection and Qualification of Differential Methylation☆11Updated last year
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 2 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆11Updated 2 years ago
- ☆13Updated 6 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 months ago
- ☆21Updated last month
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 10 months ago
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆14Updated 2 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- ☆19Updated 3 months ago
- Preprocessing sequencing data for allele-specific analysis☆11Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 6 months ago
- Indel caller for DNA-seq or RNA-seq☆14Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 9 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 7 months ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆8Updated last year
- A new tool to infer sex from massively parallel sequencing data.☆16Updated 7 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Updated 2 months ago
- ☆9Updated 4 years ago
- Reconstruction of focal amplifications with long reads☆17Updated this week