lskatz / fastenLinks
Fasten toolkit, for streaming operations on fastq files
☆80Updated 3 weeks ago
Alternatives and similar repositories for fasten
Users that are interested in fasten are comparing it to the libraries listed below
Sorting:
- bioinformatics toolkit in rust☆93Updated last month
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- expressions on VCFs☆86Updated 7 months ago
- Fast DNA search and [host] depletion using minimizers☆88Updated last week
- gia: Genomic Interval Arithmetic☆64Updated last year
- A quality control tool for FASTQ files written in rust☆52Updated 5 months ago
- Creating alignment plots from bam files☆67Updated last week
- ☆47Updated 2 years ago
- sfasta☆35Updated 6 months ago
- sunburst plots for taxonomy - working to update Krona☆41Updated 2 months ago
- Nail is an Alignment Inference tooL☆53Updated this week
- Grep for FASTQ files☆102Updated 7 months ago
- Drug Resistance Prediction with Reference Graphs☆21Updated last month
- ☆21Updated 10 months ago
- ☆58Updated last year
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆44Updated 3 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 6 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- viral-ngs: complete pipelines☆68Updated last week
- A versatile toolkit for k-mers with taxonomic information☆80Updated 2 months ago
- Python bindings for the TaxonKit library☆41Updated 4 months ago
- Toolkit for manipulating FASTA and SAM files☆20Updated last year
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆75Updated last month
- Strain resolver for metagenomics☆78Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆44Updated 3 months ago
- Add biological annotations to variants in a given VCF file.☆32Updated 4 years ago
- Find Unique genomic Regions☆32Updated 3 weeks ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆38Updated 3 weeks ago
- Used to trim off the primer sequence from mutiplex amplicon sequencing☆24Updated last year
- seqfu - Sequece Fastx Utilities☆122Updated last month