Fasten toolkit, for streaming operations on fastq files
☆82Oct 24, 2025Updated 6 months ago
Alternatives and similar repositories for fasten
Users that are interested in fasten are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast FASTX parsing and k-mer methods in Rust☆211Apr 20, 2026Updated 2 weeks ago
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- k-mers and the like☆22Apr 27, 2026Updated last week
- Randomly subsample sequencing reads or alignments☆261Updated this week
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆69Updated this week
- TAXnomic Profile Aggregation and STAndardisation☆42Nov 18, 2025Updated 5 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Aug 26, 2024Updated last year
- ☆21Feb 15, 2025Updated last year
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- A genomic minhashing implementation in Rust☆103Jun 17, 2025Updated 10 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Split k-mer analysis – version 2☆105Apr 9, 2026Updated 3 weeks ago
- Genome size estimation from long read overlaps☆86Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 3 months ago
- UPHL's Reference Free Pipeline☆28Apr 14, 2026Updated 2 weeks ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- FASTA and FASTQ parsing in Rust☆85Mar 14, 2025Updated last year
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Apr 24, 2026Updated last week
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated last week
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- seqfu - Sequece Fastx Utilities☆126Apr 17, 2026Updated 2 weeks ago
- A curated database of completed assemblies with taxonomy IDs☆51Mar 21, 2026Updated last month
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆17Nov 18, 2024Updated last year
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆62Mar 25, 2026Updated last month
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 8 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- A pairwise sequence aligner written in Rust☆153Jan 27, 2026Updated 3 months ago
- Colinear block visualisation tool☆31Jan 17, 2024Updated 2 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆249Oct 12, 2025Updated 6 months ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 8 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago