Analysis of sequencing error profile for long read data.
☆13Mar 30, 2023Updated 3 years ago
Alternatives and similar repositories for SeqFaiLR
Users that are interested in SeqFaiLR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆50Jul 21, 2026Updated last week
- A package to count reads mapping on transposable elements subfamilies, families and classes.☆12Feb 3, 2023Updated 3 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- Stitch together Nanopore tiled amplicon data without polishing a reference☆18Jan 29, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆12Dec 15, 2023Updated 2 years ago
- New version of JACUSA -> 2.0☆32Jun 2, 2026Updated last month
- ☆27Jun 16, 2026Updated last month
- Nextflow implementation of scAutoQC pipeline☆12Jul 9, 2026Updated 2 weeks ago
- Malleable All-seeing Journal Of Research Artifacts☆35May 22, 2023Updated 3 years ago
- ☆12Feb 16, 2024Updated 2 years ago
- A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.☆15Oct 21, 2025Updated 9 months ago
- Bact-Builder: Microbial de novo genome assembly pipeline☆13Dec 5, 2022Updated 3 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆33Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆25Mar 9, 2026Updated 4 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- The modern argument parser for c++ tools☆11Jul 18, 2026Updated last week
- A new high-resolution long-read metagenome assembler for even noisy reads☆161Jul 3, 2026Updated 3 weeks ago
- ☆15May 21, 2026Updated 2 months ago
- Unix table column and row manipulation using column names☆12Jun 17, 2026Updated last month
- Two ImageJ plugins to count mammalian cells in the pictures of cell suspension in a standard hemocytometer.☆16Jan 25, 2023Updated 3 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- bioinformatic pipeline for GLORI☆24Mar 30, 2026Updated 3 months ago
- Cooler demo using a Jupyter notebook Binder☆19Sep 24, 2020Updated 5 years ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- A MinION-based pipeline for tracking species biodiversity☆13Feb 19, 2024Updated 2 years ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Apr 3, 2020Updated 6 years ago
- Multiple Bacteria Genome Compressor (MBGC)☆13Jun 1, 2026Updated last month
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 4 months ago
- Unix terminal histograms, sequencing depth and bar charts (hissyfit). Small data/file munge, morph, find and count scripts/functions in v…☆22Jun 30, 2026Updated 3 weeks ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Description Materials for Spring 2020 Applied Genomics Course☆16Apr 22, 2020Updated 6 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 2 weeks ago
- Image Segmentation using Superpixels, Affinity Propagation and Kmeans Clustering☆20Feb 1, 2026Updated 5 months ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆13Updated this week
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆117Updated this week
- Source code of the processing-in-memory simulator used in the GRIM-Filter paper published at BMC Genomics in 2018: "GRIM-Filter: Fast See…☆11Feb 5, 2018Updated 8 years ago