cdelahaye / SeqFaiLR
Analysis of sequencing error profile for long read data.
☆12Updated 2 years ago
Alternatives and similar repositories for SeqFaiLR
Users that are interested in SeqFaiLR are comparing it to the libraries listed below
Sorting:
- ☆27Updated last year
- ☆27Updated 3 years ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆13Updated last month
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated this week
- Snakemake pipeline to analyze transposable element 'omics data.☆20Updated last week
- ☆41Updated 2 months ago
- ☆20Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated 5 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- ☆17Updated last year
- perSVade: personalized Structural Variation detection☆39Updated 2 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 3 weeks ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆32Updated last month
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- A battery of methylation tools for PacBio HiFi reads☆34Updated 2 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Linear-time de novo Long Read Assembler☆40Updated 3 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆24Updated this week
- Ancient microbiome snakemake workflow☆24Updated last month
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last month
- GUI for inspecting POD5 files☆28Updated 5 months ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆19Updated last week