cdelahaye / SeqFaiLRLinks
Analysis of sequencing error profile for long read data.
☆13Updated 2 years ago
Alternatives and similar repositories for SeqFaiLR
Users that are interested in SeqFaiLR are comparing it to the libraries listed below
Sorting:
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- ☆29Updated 2 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆39Updated last week
- A battery of methylation tools for PacBio HiFi reads☆43Updated 2 weeks ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆24Updated 6 months ago
- ☆20Updated 3 years ago
- ☆29Updated 4 years ago
- ☆18Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 2 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆16Updated last month
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 8 months ago
- ☆25Updated 2 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 weeks ago
- ☆45Updated last week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆57Updated last year
- Joint structural variant and copy number variant caller for HiFi sequencing data☆64Updated 3 weeks ago
- Kmer Analysis of Pileups for Genotyping☆33Updated last week
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆68Updated 2 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- GUI for inspecting POD5 files☆34Updated 11 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆81Updated last week
- ☆21Updated 9 months ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆48Updated this week
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated last week
- Linear-time de novo Long Read Assembler☆41Updated last month
- ☆67Updated last year