MrOlm / inStrainLinks
Bioinformatics program inStrain
☆174Updated 2 months ago
Alternatives and similar repositories for inStrain
Users that are interested in inStrain are comparing it to the libraries listed below
Sorting:
- Pipeline for metabolic annotation of microbial genomes☆149Updated 3 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆150Updated last month
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆122Updated last year
- DAS Tool☆153Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- Metagenomic classification of long-read sequencing data☆86Updated this week
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆153Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆233Updated last week
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆75Updated 2 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆202Updated last year
- A toolbox for comparative genomics.☆104Updated 4 years ago
- A user-friendly workflow for phylogenomics☆214Updated last week
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆144Updated last week
- Virus Identification By iteRative ANnoTation☆171Updated last year
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆137Updated this week
- Processing pipeline for pan-genome visulization and exploration☆139Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆216Updated 3 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆190Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆152Updated 3 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆131Updated 2 months ago
- ☆137Updated last year
- Find clustered hits from a BLAST search☆119Updated 7 months ago
- Supporting code for uncultivated gut virus manuscript☆72Updated 2 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆125Updated last year
- BSR-Based Allele Calling Algorithm☆148Updated 3 weeks ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆116Updated 3 weeks ago
- DDBJ Fast Annotation and Submission Tool☆79Updated 2 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆137Updated last year
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 2 months ago
- Create a tree using Mash distances☆167Updated last year