Bioinformatics program inStrain
☆184Mar 12, 2026Updated last month
Alternatives and similar repositories for inStrain
Users that are interested in inStrain are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆332Apr 20, 2026Updated 2 weeks ago
- Rapid comparison and dereplication of genomes☆336Nov 10, 2025Updated 5 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆301Feb 3, 2026Updated 3 months ago
- Variational autoencoder for metagenomic binning☆322Apr 27, 2026Updated last week
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆72Dec 1, 2025Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated 3 weeks ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆185Apr 16, 2026Updated 2 weeks ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆257Mar 20, 2025Updated last year
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆225Mar 24, 2026Updated last month
- ☆64Feb 27, 2024Updated 2 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆161Apr 25, 2026Updated last week
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- Virus Identification By iteRative ANnoTation☆194Apr 15, 2024Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆408Mar 2, 2026Updated 2 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆40Sep 17, 2025Updated 7 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆44Sep 3, 2024Updated last year
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆597Apr 21, 2026Updated last week
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆260Jul 27, 2024Updated last year
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆229Apr 1, 2026Updated last month
- Graph-based assembly phasing☆94Nov 25, 2025Updated 5 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆362Mar 29, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Population genomics from metagenomes☆13Sep 1, 2024Updated last year
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- Improvement of metagenome-assembled genomes☆58Mar 17, 2020Updated 6 years ago
- CLI tool to annotate genes with KOfam☆94Jun 6, 2023Updated 2 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆184Mar 17, 2026Updated last month
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆90Mar 12, 2026Updated last month
- customizable pipeline to identify viral sequences from (meta)genomic data☆289Nov 28, 2024Updated last year
- Fast Whole-Genome Similarity (ANI) Estimation☆458Dec 16, 2025Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- From annotated genomes to metabolic screening in large scale microbiotas☆71Apr 27, 2026Updated last week
- Analysis of the population diversity of SARS-CoV-2 within and between individual patients☆15Apr 30, 2020Updated 6 years ago
- An updated pipeline for pangenome investigation☆356Apr 22, 2026Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆636Feb 18, 2026Updated 2 months ago
- ☆15Jun 26, 2025Updated 10 months ago
- CAMISIM: Simulating metagenomes and microbial communities☆224Apr 21, 2026Updated last week
- A complete pipeline for metagenomic analysis☆442Updated this week