xzhub / LTR_Finder
LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
☆47Updated last year
Alternatives and similar repositories for LTR_Finder
Users that are interested in LTR_Finder are comparing it to the libraries listed below
Sorting:
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 3 years ago
- ☆40Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆44Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- A parallel wrapper for LTR_FINDER☆50Updated last month
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated 2 years ago
- ☆43Updated 8 years ago
- Neural network classification of TE☆87Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆32Updated 7 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆29Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 8 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆50Updated 5 years ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated last year
- NLR-Annotator upload☆65Updated last year
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆54Updated last week
- A novel genome assembly pipeline based on deep learning☆62Updated 5 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆60Updated 4 months ago
- A program to call variants from genome alignment☆80Updated 2 weeks ago
- Genome Annotation Pipeline☆35Updated 8 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 2 years ago
- ☆71Updated 2 months ago
- DNA序列比对结果 可视化展示工具☆50Updated 2 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆32Updated this week
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆41Updated last month
- PhyloAcc a software to detect the changes of conservation of a genomic region☆30Updated last month
- A tool for performing collinearity-incorporating homology inference☆31Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago