xzhub / LTR_Finder
LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
☆43Updated last year
Alternatives and similar repositories for LTR_Finder:
Users that are interested in LTR_Finder are comparing it to the libraries listed below
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- ☆37Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆44Updated 9 months ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated last year
- use long sequenced reads to close gaps in assemblies☆36Updated 6 years ago
- A parallel wrapper for LTR_FINDER☆49Updated last year
- A tool for performing collinearity-incorporating homology inference☆28Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- Neural network classification of TE☆87Updated 2 years ago
- Genome Annotation Pipeline☆35Updated 5 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 7 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆56Updated 2 weeks ago
- ☆27Updated last year
- ☆43Updated 8 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 3 years ago
- ☆28Updated 5 months ago
- ☆29Updated 3 weeks ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆29Updated last month
- A genome assembly assessment pipeline.☆37Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆30Updated 4 months ago
- ☆24Updated 2 weeks ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆74Updated 3 months ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 2 months ago
- ☆20Updated 5 months ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆18Updated 10 months ago
- This is a method to find telomeres and centromeres in plants.☆37Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year