xzhub / LTR_FinderLinks
LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
☆49Updated last year
Alternatives and similar repositories for LTR_Finder
Users that are interested in LTR_Finder are comparing it to the libraries listed below
Sorting:
- Neural network classification of TE☆94Updated 2 months ago
- A parallel wrapper for LTR_FINDER☆54Updated 5 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆38Updated 6 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆47Updated 2 months ago
- ☆40Updated 2 years ago
- Genome Annotation Pipeline☆36Updated last year
- ☆44Updated 8 years ago
- ☆78Updated last month
- TSEBRA: Transcript Selector for BRAKER☆47Updated 9 months ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆88Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆46Updated 3 months ago
- A program to call variants from genome alignment☆81Updated 4 months ago
- A organelle de novo genome assembly toolkit☆69Updated 6 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆81Updated 4 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆43Updated last month
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆76Updated 2 weeks ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆32Updated last year
- A novel genome assembly pipeline based on deep learning☆64Updated 8 months ago
- ☆77Updated 5 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆67Updated last month
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆71Updated 5 months ago
- This is the standalone version of the EviAnn pipeline☆115Updated last week
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 11 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- An efficient assembly tool for plant mitochondrial genome☆63Updated last year