jingwanglab / Populus_superpangenomeLinks
Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread forest trees
☆15Updated last year
Alternatives and similar repositories for Populus_superpangenome
Users that are interested in Populus_superpangenome are comparing it to the libraries listed below
Sorting:
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Updated 5 years ago
- Selection outlier scan with population branch statistic☆13Updated last year
- ☆12Updated 5 years ago
- Some useful gadgets☆10Updated 3 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆34Updated last month
- ☆25Updated 3 years ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- Centromics: visualing centromeres with multiple omics data☆24Updated 5 months ago
- Genome haplotype assembly and assessment method☆12Updated last year
- Centromics: visualing centromeres with multiple omics data☆19Updated last year
- ☆40Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆30Updated 6 months ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆24Updated last year
- ☆24Updated last year
- Automated pipeline for running CoalHMM☆13Updated last year
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 5 months ago
- a Semi-automated pipeline for assembling T2T genome☆19Updated 2 months ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- ☆12Updated last month
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated 8 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆31Updated 4 months ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Scripts that used in our chicken T2T manuscript.☆20Updated 2 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆17Updated last year
- ☆21Updated last year
- ☆27Updated 4 months ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Updated 4 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- ☆35Updated 2 weeks ago