jingwanglab / Populus_superpangenomeLinks
Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread forest trees
☆17Updated last year
Alternatives and similar repositories for Populus_superpangenome
Users that are interested in Populus_superpangenome are comparing it to the libraries listed below
Sorting:
- Centromics: visualing centromeres with multiple omics data☆25Updated 9 months ago
- Genome haplotype assembly and assessment method☆12Updated 2 years ago
- a Semi-automated pipeline for assembling T2T genome☆25Updated 2 months ago
- Some useful gadgets☆10Updated 3 years ago
- ☆41Updated 2 years ago
- ☆12Updated 6 years ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Updated 5 years ago
- ☆26Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 10 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆44Updated 3 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆40Updated last year
- ☆21Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆33Updated 2 months ago
- ☆33Updated 9 months ago
- ☆31Updated 8 months ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆29Updated last year
- ☆42Updated 5 months ago
- Automated pipeline for running CoalHMM☆13Updated 2 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 7 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆35Updated last year
- BAsh-Based Automated Parallel Positive selection Analysis☆16Updated 2 months ago
- Dynamic Elongation of a Genome Assembly Path☆23Updated 2 weeks ago
- Selection outlier scan with population branch statistic☆14Updated last year
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- ☆16Updated 3 years ago
- Scripts that used in our chicken T2T manuscript.☆22Updated 2 years ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago