Alternatives and similar repositories for Populus_superpangenome

Users that are interested in Populus_superpangenome are comparing it to the libraries listed below

• thamala / PBScan
  Selection outlier scan with population branch statistic
  ☆14Updated last year
• JM-SONG / GenomeSyn
  ☆25Updated 3 years ago
• jingwanglab / Widespread-linked-selection
  Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.
  ☆11Updated 5 years ago
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆37Updated 2 months ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆24Updated 6 months ago
• wen-chen / naughty_monkey
  Some useful gadgets
  ☆10Updated 3 years ago
• Immortal2333 / Haplotype_Genome_Assembly
  Genome haplotype assembly and assessment method
  ☆12Updated last year
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆19Updated last year
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆20Updated last week
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆32Updated 7 months ago
• Zhanmengtao / bin
  scripts
  ☆18Updated 6 years ago
• SwallowGenomics / BarnSwallow
  ☆12Updated 2 years ago
• LQHHHHH / paml-yn00-run-pipeline
  A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method
  ☆10Updated 6 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆22Updated last year
• amsession / Kmer-based-Subgenome-Mapping
  ☆21Updated last year
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆34Updated 11 months ago
• xjtu-omics / HiCAT
  HiCAT new project
  ☆28Updated 3 months ago
• ShiuLab / PseudogenePipeline
  ☆40Updated 2 years ago
• zhangrengang / subgenome_phasing_example
  An Example of Subgenome Phasing for Complex Allopolyploidy
  ☆13Updated 3 months ago
• nbedelman / DiscovarCompGenomics
  ☆12Updated 5 years ago
• tangerzhang / calc_switchErr
  ☆27Updated 4 months ago
• jkimlab / DESCHRAMBLER
  ☆24Updated last year
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆42Updated 11 months ago
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆20Updated 2 years ago
• Zhenlisme / heliano
  HELIANO is a software for detection and classification of Helitron-like elements.
  ☆30Updated 2 months ago
• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆16Updated 6 years ago
• symgenoevolab / SyntenyFinder
  SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…
  ☆32Updated 7 months ago
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 7 years ago
• unavailable-2374 / Genome-Wide-Annotation-Pipeline
  This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.
  ☆25Updated last year