NBISweden / TransposonPSI
TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to major clades/families of transposon Open Reading Frames.
☆13Updated 4 years ago
Alternatives and similar repositories for TransposonPSI:
Users that are interested in TransposonPSI are comparing it to the libraries listed below
- Genome alignment and synteny plots☆28Updated last year
- ☆15Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- Domain based annotation of transposable elements☆19Updated last month
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- ☆21Updated last year
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 5 months ago
- Yet another Hi-C scaffolding tool☆19Updated 4 months ago
- ☆20Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆22Updated 3 months ago
- ☆27Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated last month
- Diploid genome assembly analysis tools☆14Updated 5 months ago
- Toolkit for evolutionary analyses of linkage groups☆26Updated 7 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated this week
- A box of genomics tools☆21Updated 4 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- plot genome alignment synteny☆20Updated 4 years ago
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- ☆27Updated 3 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆13Updated last year
- assembly evaluation tool☆34Updated 2 years ago
- FastK based version of Merqury☆22Updated 2 weeks ago
- ☆16Updated 2 months ago
- ☆27Updated 2 years ago