NBISweden / TransposonPSI
TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to major clades/families of transposon Open Reading Frames.
☆13Updated 4 years ago
Alternatives and similar repositories for TransposonPSI:
Users that are interested in TransposonPSI are comparing it to the libraries listed below
- Genome alignment and synteny plots☆27Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- ☆15Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- Domain based annotation of transposable elements☆19Updated this week
- Diploid genome assembly analysis tools☆14Updated 4 months ago
- ☆15Updated last month
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Centromics: visualing centromeres with multiple omics data☆22Updated 2 months ago
- ☆25Updated 3 years ago
- plot genome alignment synteny☆20Updated 4 years ago
- ☆27Updated last year
- Toolkit for evolutionary analyses of linkage groups☆26Updated 6 months ago
- ☆21Updated 11 months ago
- Yet another Hi-C scaffolding tool☆18Updated 3 months ago
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆37Updated last year
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- A box of genomics tools☆21Updated 4 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 4 months ago
- ☆37Updated last year
- SINE annotation tool for plant genomes☆17Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated last year
- ☆15Updated 2 years ago
- Reconstruction of ancestral genome maps☆16Updated 6 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year