moshi4 / CafePlotterLinks
A tool for plotting CAFE5 gene family expansion/contraction result
☆32Updated last year
Alternatives and similar repositories for CafePlotter
Users that are interested in CafePlotter are comparing it to the libraries listed below
Sorting:
- ☆79Updated 2 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆77Updated 11 months ago
- Genome annotation pipeline☆61Updated last year
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆63Updated 6 years ago
- scripts used in Rice Pangenome Projects (Evolution).☆13Updated last year
- An efficient assembly tool for plant mitochondrial genome☆64Updated last year
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆49Updated last year
- ☆82Updated last year
- NLR-Annotator upload☆71Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆117Updated 2 weeks ago
- Neural network classification of TE☆95Updated 3 months ago
- A parallel wrapper for LTR_FINDER☆54Updated 5 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆69Updated this week
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- a Semi-automated pipeline for assembling T2T genome☆21Updated 2 weeks ago
- DNA序列比对结果 可视化展示工具☆54Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- ☆40Updated 2 years ago
- BAsh-Based Automated Parallel Positive selection Analysis☆15Updated last week
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆66Updated 5 months ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆29Updated 4 months ago
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆68Updated 4 years ago
- Plastid Genome Annotator☆53Updated 4 years ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- ☆44Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- Plant genome assembly and annotation pipeline using snakemake☆47Updated 4 months ago