Alternatives and similar repositories for CafePlotter:

Users that are interested in CafePlotter are comparing it to the libraries listed below

• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆44Updated 9 months ago
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆56Updated 2 weeks ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 5 months ago
• ShiuLab / PseudogenePipeline
  ☆37Updated last year
• bichangwei / PMAT
  An efficient assembly tool for plant mitochondrial genome
  ☆59Updated 8 months ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆29Updated last month
• sc-zhang / AlleleFinder
  AlleleFinder is a tool for identifying allele genes from polyploid genome.
  ☆24Updated last month
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆44Updated 2 years ago
• SwiftSeal / resistify
  Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…
  ☆29Updated this week
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆65Updated 3 years ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆60Updated 3 months ago
• DessimozLab / OMArk
  ☆68Updated last week
• Dee-chen / Tree2gd
  ☆39Updated 2 years ago
• hwc2021 / GSAT
  Graph-based Sequence Assembly Toolkit
  ☆19Updated 2 months ago
• Jwindler / AutoHiC
  A novel genome assembly pipeline based on deep learning
  ☆59Updated last month
• zhangrengang / SubPhaser
  To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.
  ☆57Updated 9 months ago
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆43Updated last year
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆34Updated 2 years ago
• xtmtd / PLWS
  Phylogenomics from Low-coverage Whole-genome Sequencing
  ☆37Updated 4 years ago
• ForBioPhylogenomics / tutorials
  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
  ☆32Updated 10 months ago
• chenlianfu / geta
  ☆73Updated 6 months ago
• YanCCscu / MEANGS
  MitoDNA extending assembler from NGS data
  ☆20Updated last year
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆78Updated 3 years ago
• oushujun / LTR_FINDER_parallel
  A parallel wrapper for LTR_FINDER
  ☆49Updated last year
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆36Updated 6 years ago
• i10labtitech / GINGER
  ☆27Updated last year
• meiyang12 / Genome-annotation-pipeline
  Genome annotation pipeline
  ☆56Updated 7 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 2 months ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆37Updated last year
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆35Updated last year