moshi4 / CafePlotterLinks
A tool for plotting CAFE5 gene family expansion/contraction result
☆32Updated 2 years ago
Alternatives and similar repositories for CafePlotter
Users that are interested in CafePlotter are comparing it to the libraries listed below
Sorting:
- Genome annotation pipeline☆62Updated last year
- An efficient assembly tool for plant mitochondrial genome☆63Updated last year
- ☆79Updated 2 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆78Updated last year
- BAsh-Based Automated Parallel Positive selection Analysis☆15Updated last week
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆69Updated 3 weeks ago
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆63Updated 6 years ago
- Neural network classification of TE☆96Updated 4 months ago
- This is the standalone version of the EviAnn pipeline☆123Updated last week
- ☆45Updated 2 years ago
- NLR-Annotator upload☆72Updated 2 years ago
- ☆82Updated last year
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆49Updated last year
- scripts used in Rice Pangenome Projects (Evolution).☆13Updated last year
- A parallel wrapper for LTR_FINDER☆54Updated 6 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- Plastid Genome Annotator☆53Updated 4 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆67Updated 6 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆48Updated 4 months ago
- Plant genome assembly and annotation pipeline using snakemake☆47Updated 4 months ago
- Tutorials on phylogenetic and phylogenomic inference☆49Updated 5 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- a Semi-automated pipeline for assembling T2T genome☆23Updated last month
- DNA序列比对结果 可视化展示工具☆55Updated 2 years ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆36Updated 2 years ago
- Phylogenomics from Low-coverage Whole-genome Sequencing☆39Updated 5 years ago
- A novel genome assembly pipeline based on deep learning☆65Updated 10 months ago