moshi4 / CafePlotterLinks
A tool for plotting CAFE5 gene family expansion/contraction result
☆36Updated 2 years ago
Alternatives and similar repositories for CafePlotter
Users that are interested in CafePlotter are comparing it to the libraries listed below
Sorting:
- Genome annotation pipeline☆65Updated last year
- Neural network classification of TE☆97Updated 4 months ago
- ☆89Updated 2 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆93Updated 2 weeks ago
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆63Updated 6 years ago
- An efficient assembly tool for plant mitochondrial genome☆69Updated last year
- Genome Annotation Pipeline☆42Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆36Updated last month
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆77Updated 2 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆54Updated 5 years ago
- ☆86Updated last year
- DNA序列比对结果 可视化展示工具☆57Updated 3 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆51Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆136Updated this week
- A novel genome assembly pipeline based on deep learning☆68Updated last year
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Updated 10 months ago
- A parallel wrapper for LTR_FINDER☆55Updated 10 months ago
- NLR-Annotator upload☆76Updated 2 years ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆32Updated 8 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆68Updated 4 years ago
- Plastid Genome Annotator☆54Updated 5 years ago
- scripts used in Rice Pangenome Projects (Evolution).☆13Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆21Updated 2 years ago
- ☆45Updated 3 years ago
- scripts☆20Updated 7 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆103Updated 2 months ago
- use long sequenced reads to close gaps in assemblies☆40Updated 7 years ago
- ☆41Updated 2 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Updated 2 years ago