JiaoLaboratory / CRAQLinks
Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
☆69Updated 3 weeks ago
Alternatives and similar repositories for CRAQ
Users that are interested in CRAQ are comparing it to the libraries listed below
Sorting:
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- A organelle de novo genome assembly toolkit☆69Updated 7 months ago
- ☆79Updated 2 months ago
- Neural network classification of TE☆96Updated 4 months ago
- A program to call variants from genome alignment☆81Updated 5 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆97Updated last week
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- A parallel wrapper for LTR_FINDER☆54Updated 6 months ago
- A tool for evaluating long-read de novo assembly results☆46Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆51Updated 2 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆67Updated 6 months ago
- Pipeline to convert a haploid assembly into diploid☆103Updated 8 months ago
- ☆45Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- RepeatIdentifier☆69Updated 6 months ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- ☆44Updated 8 years ago
- This is the standalone version of the EviAnn pipeline☆123Updated last week
- A tool for plotting CAFE5 gene family expansion/contraction result☆32Updated 2 years ago
- HiCAT new project☆29Updated 4 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆39Updated 2 weeks ago
- An efficient assembly tool for plant mitochondrial genome☆64Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆73Updated last month
- PacBio BAM toolkit☆46Updated 7 months ago
- Identification of transposable element families from pangenome polymorphisms☆53Updated 4 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 7 months ago