JiaoLaboratory / CRAQLinks
Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
☆77Updated last month
Alternatives and similar repositories for CRAQ
Users that are interested in CRAQ are comparing it to the libraries listed below
Sorting:
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- ☆88Updated last month
- A organelle de novo genome assembly toolkit☆73Updated 10 months ago
- A parallel wrapper for LTR_FINDER☆55Updated 9 months ago
- Neural network classification of TE☆97Updated 3 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆110Updated last week
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- A tool for evaluating long-read de novo assembly results☆50Updated last year
- A program to call variants from genome alignment☆81Updated 8 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆44Updated 3 months ago
- ☆41Updated 2 years ago
- a Semi-automated pipeline for assembling T2T genome☆25Updated 3 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Updated 9 months ago
- This is the standalone version of the EviAnn pipeline☆133Updated this week
- RepeatIdentifier☆71Updated 10 months ago
- ☆21Updated last year
- A program for assessing the T2T genome continuity☆92Updated last month
- A tool for plotting CAFE5 gene family expansion/contraction result☆35Updated 2 years ago
- MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆76Updated this week
- Identification of transposable element families from pangenome polymorphisms☆55Updated 7 months ago
- Pipeline to convert a haploid assembly into diploid☆109Updated 11 months ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- Genome Annotation Pipeline☆42Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆85Updated 4 years ago
- Plant genome assembly and annotation pipeline using snakemake☆52Updated 8 months ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆31Updated 8 months ago
- Call select base modifications in PacBio HiFi reads☆15Updated 2 months ago
- ☆45Updated 3 years ago