JiaoLaboratory / CRAQLinks
Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
☆62Updated 4 months ago
Alternatives and similar repositories for CRAQ
Users that are interested in CRAQ are comparing it to the libraries listed below
Sorting:
- TSEBRA: Transcript Selector for BRAKER☆47Updated 6 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A organelle de novo genome assembly toolkit☆59Updated 3 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 4 years ago
- This is the standalone version of the EviAnn pipeline☆91Updated this week
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆44Updated 8 years ago
- ☆73Updated 2 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- Neural network classification of TE☆87Updated 2 years ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 3 weeks ago
- A program to call variants from genome alignment☆80Updated last month
- Genome Annotation Pipeline☆35Updated 9 months ago
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- ☆40Updated last year
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆50Updated 5 years ago
- RepeatIdentifier☆63Updated 2 months ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆29Updated last year
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆48Updated last year
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- A parallel wrapper for LTR_FINDER☆50Updated 2 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆53Updated last week
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆70Updated 2 months ago
- A novel genome assembly pipeline based on deep learning☆62Updated 6 months ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 4 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆107Updated last week
- A tool for evaluate long-read de novo assembly results☆47Updated 9 months ago
- paml documentation and tutorials☆56Updated 2 weeks ago