JiaoLaboratory / CRAQ
Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
☆56Updated last month
Related projects ⓘ
Alternatives and complementary repositories for CRAQ
- High-precision TE Annotator☆65Updated last week
- TSEBRA: Transcript Selector for BRAKER☆47Updated last week
- Pipeline to convert a haploid assembly into diploid☆92Updated 6 months ago
- ☆72Updated last month
- A organelle de novo genome assembly toolkit☆44Updated 3 weeks ago
- ☆61Updated 7 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- Collection of tools for the analysis of CpG data☆74Updated 8 months ago
- tomato graph pangenome☆73Updated last year
- PacBio BAM toolkit☆39Updated 3 weeks ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆43Updated 9 months ago
- Neural network classification of TE☆86Updated 2 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆85Updated 3 weeks ago
- Mapping pipeline for data generated using Arima-HiC☆71Updated 5 months ago
- Structural Variant Identification Method using Genome Assemblies☆93Updated 2 years ago
- Phased assembly variant caller☆98Updated 3 weeks ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆70Updated this week
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆90Updated last month
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆47Updated 4 years ago
- NLR-Annotator upload☆60Updated last year
- DNA序列比对结果 可视化展示工具☆43Updated last year
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆67Updated 3 weeks ago
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- An efficient assembly tool for plant mitochondrial genome☆28Updated 5 months ago
- Synteny Imager☆60Updated 2 months ago
- Splitting of sequence reads by internal adapter sequence search☆52Updated last year
- ☆43Updated 7 years ago
- TGS scaffolding☆45Updated 3 years ago
- use long sequenced reads to close gaps in assemblies☆35Updated 6 years ago