This is a method to find telomeres and centromeres in plants.
☆43Jun 17, 2023Updated 3 years ago
Alternatives and similar repositories for Telomeres_and_Centromeres
Users that are interested in Telomeres_and_Centromeres are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jul 25, 2021Updated 4 years ago
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Jul 1, 2026Updated last week
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆29Oct 20, 2023Updated 2 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Jun 10, 2025Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆179Jun 23, 2026Updated 3 weeks ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 4 years ago
- conserved non-coding sequence☆17Feb 21, 2022Updated 4 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆52Jul 3, 2026Updated last week
- Identify and find telomeres, or telomeric repeats in a genome.☆170Nov 24, 2025Updated 7 months ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Plant genome assembly and annotation pipeline using snakemake☆55May 14, 2025Updated last year
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Mar 21, 2024Updated 2 years ago
- ☆42May 19, 2025Updated last year
- ☆26Jun 27, 2026Updated 2 weeks ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆18Nov 29, 2024Updated last year
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆11Dec 7, 2022Updated 3 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆32Nov 9, 2025Updated 8 months ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆15Nov 1, 2024Updated last year
- ☆30Mar 4, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆46Updated this week
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated last year
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆18Apr 1, 2024Updated 2 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 9 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27May 24, 2021Updated 5 years ago
- ☆15Aug 6, 2025Updated 11 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- The codes to assemble two sorghum cultivars☆10May 11, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆27Mar 4, 2025Updated last year
- A tool for plotting CAFE5 gene family expansion/contraction result☆37Sep 22, 2023Updated 2 years ago
- Dynamic Elongation of a Genome Assembly Path☆25Apr 29, 2026Updated 2 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆275Jul 7, 2026Updated last week
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year