Malfoy / BCOOLLinks
de Bruijn graph cOrrectiOn from graph aLignment
☆11Updated 5 years ago
Alternatives and similar repositories for BCOOL
Users that are interested in BCOOL are comparing it to the libraries listed below
Sorting:
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Minimum plain text representation of kmer sets☆16Updated 8 months ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- ☆13Updated 9 years ago
- Simulate mutations in genomes☆15Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 6 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10Updated 4 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- Variant call verification☆16Updated 4 months ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Updated 7 years ago
- Variant call adjudication☆16Updated last year
- Nanopore read de-multiplexer☆13Updated 5 years ago
- ☆12Updated 3 weeks ago
- Naive PCA for genotype data☆10Updated 9 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- ☆24Updated last month
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 10 months ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- Long read to reference genome mapping tool☆13Updated last year
- De novo genome assembler.☆11Updated 7 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago