Malfoy / BCOOL
de Bruijn graph cOrrectiOn from graph aLignment
☆11Updated 4 years ago
Alternatives and similar repositories for BCOOL:
Users that are interested in BCOOL are comparing it to the libraries listed below
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated last year
- Simulate mutations in genomes☆15Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- ☆14Updated 9 years ago
- ☆12Updated 2 weeks ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- De novo genome assembler.☆11Updated 6 years ago
- Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads☆7Updated 6 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 6 months ago
- Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing☆9Updated 7 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Variant call adjudication☆16Updated 10 months ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- ☆16Updated 7 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 6 months ago
- split a FASTA sequence file into shorter sequences☆10Updated 4 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 6 months ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- nimble aligner that will map your reads to the references on a laptop☆12Updated 7 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- Indel-aware consensus for aligned BAM☆21Updated last month
- Utilities to detect and profile `het-kmers`☆11Updated 9 months ago
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 4 years ago