Alternatives and similar repositories for BCOOL

Users that are interested in BCOOL are comparing it to the libraries listed below

• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated 2 years ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• algbio / matchtigs
  Minimum plain text representation of kmer sets
  ☆17Updated 6 months ago
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆21Updated 4 months ago
• bede / seqsum
  Robust individual and aggregate checksums for nucleotide sequences
  ☆17Updated last year
• iqbal-lab-org / simutator
  Simulate mutations in genomes
  ☆15Updated 5 years ago
• mchaisso / mcutils
  ☆12Updated 4 months ago
• Malfoy / NIQKI
  Next Index to Query Kmer Intersection
  ☆16Updated 2 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated last week
• antrec / spectrassembler
  Tool (experimental) to compute layout from overlaps with spectral algorithm
  ☆11Updated 7 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 10 months ago
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 3 years ago
• ekg / wflign
  the we-flyin WFA-guided ultralong tiling sequence aligner
  ☆11Updated 4 years ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 9 years ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 3 months ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 7 years ago
• thegenemyers / DAMAPPER
  Long read to reference genome mapping tool
  ☆13Updated last year
• edawson / svaha
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆12Updated last year
• Gaius-Augustus / clamsa
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆13Updated 9 months ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆12Updated 6 years ago
• ryought / mummer-idotplot
  Generate interactive dotplot from mummer4 output using plotly
  ☆27Updated 5 years ago
• richarddurbin / hash10x
  a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly
  ☆15Updated 5 years ago
• rchikhi / rust-seq2kminmers
  Iterate k-min-mers from a DNA sequence in Rust
  ☆13Updated last year
• MoinSebi / gSV
  ☆11Updated 2 years ago
• langmead-lab / vargas
  ☆25Updated 4 years ago
• artic-network / readucks
  Nanopore read de-multiplexer
  ☆13Updated 5 years ago
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated last year
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆32Updated 3 years ago