ERGA-consortium / pipelines

Related projects: ⓘ

• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆30Updated 5 months ago
• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆30Updated last week
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆26Updated 3 weeks ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆34Updated last year
• kensung-lab / hypo-assembler
  ☆37Updated 2 weeks ago
• wdecoster / phasius
  ☆13Updated 3 weeks ago
• KolmogorovLab / minda
  ☆12Updated 2 months ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆17Updated this week
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆21Updated 2 years ago
• rhysf / Diamond2GO
  ☆18Updated last month
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• ShunOuchi / GreenHill
  De novo chromosome-level scaffolding and phasing tool using Hi-C
  ☆27Updated 5 months ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆27Updated last year
• sanger-tol / PretextMap
  Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.
  ☆19Updated 2 years ago
• lemene / PECAT
  PECAT, a phased error correct and assembly tool
  ☆36Updated last week
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆35Updated 5 months ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆23Updated 3 months ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆19Updated 4 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆28Updated 3 years ago
• schneebergerlab / GameteBinning
  ☆12Updated 3 years ago
• merlyescalona / yagcloser
  YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
  ☆10Updated last year
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆22Updated 3 months ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆26Updated 2 years ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆18Updated last week
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆19Updated last month
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆17Updated 3 weeks ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆18Updated 10 months ago
• slimsuite / buscomp
  BUSCOMP: BUSCO Compiler and Comparison tool
  ☆20Updated 6 months ago
• AntoineHo / HapPy
  Haploidy and Size Completeness Estimation
  ☆13Updated 5 months ago
• mrvollger / NucFreq
  ☆26Updated 6 months ago