ERGA-consortium / pipelinesLinks
☆16Updated 3 weeks ago
Alternatives and similar repositories for pipelines
Users that are interested in pipelines are comparing it to the libraries listed below
Sorting:
- Consensus genome annotation using OMA☆26Updated 3 weeks ago
- ☆25Updated 10 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated last year
- ☆20Updated last week
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated last month
- SINE annotation tool for plant genomes☆17Updated last year
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Updated 4 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year
- Phasing reads with secondary alignments☆19Updated 7 months ago
- FastK based version of Merqury☆26Updated last month
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆19Updated 2 months ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last week
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- SV genotyper for long reads with a variation graph☆12Updated 3 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆12Updated last month
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆27Updated 6 months ago
- TD2☆13Updated last month
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated last month
- Improved Phased Assembler☆28Updated 3 years ago
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Tandem Repeats Finder: a program to analyze DNA sequences☆16Updated 2 years ago
- Genome Assembly 102☆14Updated 2 months ago