ERGA-consortium / pipelinesLinks
☆17Updated 3 weeks ago
Alternatives and similar repositories for pipelines
Users that are interested in pipelines are comparing it to the libraries listed below
Sorting:
- Consensus genome annotation using OMA☆31Updated 3 weeks ago
- Phasing reads with secondary alignments☆21Updated last year
- Infering ancestral synteny with hierarchical orthologous groups☆38Updated 3 months ago
- COsine SImilarity-based Genotyper using pangenomes☆25Updated 2 weeks ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- A nextflow pipeline for polishing CLR assemblies☆18Updated 3 years ago
- SINE annotation tool for plant genomes☆18Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 9 months ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Updated 4 years ago
- Improved long-read assembly by preserving contained reads☆30Updated last year
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆23Updated last week
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 11 months ago
- Genome Assembly 102☆17Updated 9 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 3 months ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Updated 3 months ago
- TD2☆31Updated 3 weeks ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated 2 years ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Updated 4 months ago
- The MafFilter genome alignment processor☆19Updated last month
- Improved Phased Assembler☆28Updated 3 years ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Updated 2 weeks ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆19Updated 6 months ago
- Genotyping lots of samples with big pangenomes☆11Updated 3 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated last month
- A Hi-C scaffolding method☆22Updated 4 years ago
- Gene copy number prediction from k-mer frequencies☆14Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago
- ANI based satellite annotation☆23Updated 3 months ago