ComparativeGenomicsToolkit / hal2vgLinks
Convert HAL to VG
☆23Updated last year
Alternatives and similar repositories for hal2vg
Users that are interested in hal2vg are comparing it to the libraries listed below
Sorting:
- ☆28Updated 6 months ago
- General purpose utility related to GAF files☆29Updated last week
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 11 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- Long-read aligner to pangenome graphs☆29Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Linear-time de novo Long Read Assembler☆41Updated 3 months ago
- Scaffolding with Ultralong Reads☆15Updated 5 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆30Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Updated last week
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆28Updated 4 years ago
- Tandem repeat genotyping with long reads☆35Updated 4 months ago
- Phasing reads with secondary alignments☆21Updated last year
- convert PAF format to CHAIN format☆34Updated 8 months ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 3 years ago
- convert variation graph alignments to coverage maps over nodes☆27Updated 2 weeks ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 9 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- Improved long-read assembly by preserving contained reads☆30Updated last year
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- The MafFilter genome alignment processor☆19Updated last month