ComparativeGenomicsToolkit / hal2vg
Convert HAL to VG
☆22Updated 8 months ago
Alternatives and similar repositories for hal2vg:
Users that are interested in hal2vg are comparing it to the libraries listed below
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 10 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆26Updated 4 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Reference bias measuring toolkit☆18Updated 2 weeks ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago
- Phasing reads with secondary alignments☆18Updated 5 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- the pangenome graph evaluator☆26Updated 4 years ago
- Very simple and configurable all-in-one dotplot program☆12Updated 2 years ago
- General purpose utility related to GAF files☆24Updated 2 weeks ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆13Updated 2 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- ☆36Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last week
- ☆17Updated last year
- ☆28Updated 7 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 4 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆31Updated this week