ComparativeGenomicsToolkit / hal2vgLinks
Convert HAL to VG
☆23Updated last year
Alternatives and similar repositories for hal2vg
Users that are interested in hal2vg are comparing it to the libraries listed below
Sorting:
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- ☆28Updated 6 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Updated 3 years ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Updated 5 years ago
- Scaffolding with Ultralong Reads☆15Updated 5 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- ☆19Updated last year
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆28Updated 4 years ago
- Linear-time de novo Long Read Assembler☆41Updated 3 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- General purpose utility related to GAF files☆29Updated last week
- Improved long-read assembly by preserving contained reads☆30Updated last year
- ☆28Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 9 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 11 months ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 3 years ago
- The MafFilter genome alignment processor☆19Updated last month
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Updated last week
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 5 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- FastK based version of Merqury☆30Updated 2 weeks ago
- convert PAF format to CHAIN format☆34Updated 8 months ago
- Prefix-renaming FASTA records really fast.☆17Updated last year