mahulchak / mscaffolder
A comparative genome scaffolding tool
☆17Updated 6 years ago
Alternatives and similar repositories for mscaffolder:
Users that are interested in mscaffolder are comparing it to the libraries listed below
- Scaffolding with assembly likelihood optimization☆20Updated 4 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆35Updated 3 months ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- transposable element typing pipeline☆17Updated 10 months ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- Segmental duplication detection tool☆13Updated last year
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 8 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 5 months ago
- Haploidy and Size Completeness Estimation☆13Updated 9 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 2 months ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- Prefix-renaming FASTA records really fast.☆16Updated 7 months ago
- ☆15Updated 7 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- profile the repeat landscape in a genome☆15Updated 10 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- ☆21Updated 5 months ago
- Genome alignment and synteny plots☆27Updated last year
- Extracts subgraphs or components from a graph in GFA format☆23Updated 2 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 7 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆15Updated 6 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 9 months ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago