A comparative genome scaffolding tool
☆16Oct 6, 2018Updated 7 years ago
Alternatives and similar repositories for mscaffolder
Users that are interested in mscaffolder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆28Jul 18, 2026Updated last month
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Dec 1, 2022Updated 3 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆23Jul 29, 2026Updated 2 weeks ago
- Visualising discordant reads☆15Sep 2, 2015Updated 10 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆79Aug 30, 2016Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆60Sep 5, 2017Updated 8 years ago
- Workflows I find helpful for fungal genome annotation☆22Jun 30, 2023Updated 3 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 5 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22May 20, 2024Updated 2 years ago
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 5 years ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- ☆22Sep 12, 2019Updated 6 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Effector prediction pipeline based on protein properties.☆17Jul 18, 2025Updated last year
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆22Sep 20, 2022Updated 3 years ago
- Code and files used in teaching and training courses.☆31Nov 25, 2016Updated 9 years ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 4 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 2 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Dot: An interactive dot plot viewer for comparative genomics☆37Jun 22, 2026Updated last month
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆113Jan 30, 2026Updated 6 months ago
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Updated this week
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 3 years ago
- Segmental duplication detection tool☆15Feb 7, 2023Updated 3 years ago
- Modular Multi-scale Integrated Genome Graph Browser☆98Jul 23, 2026Updated 3 weeks ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- Map genetic variants and protein positions to protein interfaces in 3D☆13Sep 22, 2023Updated 2 years ago
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Identifies duplicate reads. This tool locates and tags duplicate reads in a coordinate ordered SAM or BAM file.☆24Jan 21, 2026Updated 6 months ago
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 4 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆88May 25, 2021Updated 5 years ago
- long-read depth breaking☆12Apr 19, 2018Updated 8 years ago
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 6 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated last year