mahulchak / mscaffolderLinks
A comparative genome scaffolding tool
☆16Updated 7 years ago
Alternatives and similar repositories for mscaffolder
Users that are interested in mscaffolder are comparing it to the libraries listed below
Sorting:
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Segmental duplication detection tool☆16Updated 2 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- ☆28Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 9 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated 3 weeks ago
- Infering ancestral synteny with hierarchical orthologous groups☆35Updated last month
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- FastK based version of Merqury☆28Updated last month
- Prefix-renaming FASTA records really fast.☆16Updated last year
- Haploidy and Size Completeness Estimation☆13Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 8 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆29Updated 5 months ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago