A software for calculating telomere length
☆76Oct 24, 2018Updated 7 years ago
Alternatives and similar repositories for telseq
Users that are interested in telseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Compute mean telomere length from Whole Genome Sequencing data.☆15Feb 15, 2024Updated 2 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆33Aug 18, 2025Updated 8 months ago
- Telomerecat: The telomere computational analysis tool☆23Aug 4, 2021Updated 4 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22May 20, 2024Updated last year
- Domain based annotation of transposable elements☆23Oct 8, 2025Updated 6 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Repeat-aware polishing genomes assembled using HiFi long reads☆101Apr 7, 2026Updated 3 weeks ago
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆36Apr 23, 2025Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆225Sep 18, 2025Updated 7 months ago
- Jasmine: SV Merging Across Samples☆250Dec 20, 2024Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Apr 10, 2026Updated 3 weeks ago
- ☆20Nov 30, 2023Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆63Apr 17, 2026Updated 2 weeks ago
- Tandem repeat genotyping with long reads☆36Sep 23, 2025Updated 7 months ago
- Detect novel (and reference) STR expansions from short-read data☆71Dec 6, 2025Updated 4 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆68Dec 2, 2022Updated 3 years ago
- source code for HpcGridRunner☆16Aug 2, 2021Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆60Mar 29, 2023Updated 3 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Apr 23, 2023Updated 3 years ago
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated last year
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scalable gVCF merging and joint variant calling for population sequencing projects☆183Apr 12, 2024Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Aug 3, 2023Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- ☆14Sep 11, 2023Updated 2 years ago
- A CNN - based pipeline for calling somatic SNP and INDEL variants without a matched normal☆11Sep 7, 2022Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆33Oct 18, 2021Updated 4 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 10 months ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Implementation of hotspot2 by Eric Rynes☆18May 11, 2023Updated 2 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- The MafFilter genome alignment processor☆19Apr 10, 2026Updated 3 weeks ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- Application of pan-genome for population☆117Oct 26, 2025Updated 6 months ago