Better Alignments with Translated HMMER
☆27Jul 25, 2026Updated 2 weeks ago
Alternatives and similar repositories for BATH
Users that are interested in BATH are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jan 29, 2025Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- plane sweep filtering genome alignments☆24Jul 25, 2026Updated 2 weeks ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 3 months ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Updated this week
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 9 months ago
- ☆136Aug 29, 2024Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 3 months ago
- blastn2dotplots: multiple dot-plot visualizer☆29Sep 15, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 5 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆34Jul 13, 2026Updated 3 weeks ago
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- A tool for recovering synteny blocks from multiple alignment☆34Oct 18, 2021Updated 4 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 5 months ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆87May 25, 2021Updated 5 years ago
- Identification of transposable element families from pangenome polymorphisms☆57Jun 8, 2026Updated 2 months ago
- ☆39Feb 22, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- Genome Assembly 102☆19Apr 23, 2025Updated last year
- Nail is an Alignment Inference tooL☆64Aug 1, 2026Updated last week
- ☆22Jul 13, 2026Updated 3 weeks ago
- ☆21Dec 13, 2024Updated last year
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 6 months ago
- COsine SImilarity-based Genotyper using pangenomes☆36Jul 27, 2026Updated 2 weeks ago
- ☆17Mar 2, 2024Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Learning and Aligning Large Protein Families with support of protein language models.☆34Updated this week
- gia: Genomic Interval Arithmetic☆67Aug 21, 2024Updated last year
- long-read depth breaking☆12Apr 19, 2018Updated 8 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Pangenome-based genome inference☆177Updated this week
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- Find and visualize rearrangements in DNA sequences☆55Jun 3, 2026Updated 2 months ago