TravisWheelerLab / BATHLinks
Better Alignments with Translated HMMER
☆21Updated last week
Alternatives and similar repositories for BATH
Users that are interested in BATH are comparing it to the libraries listed below
Sorting:
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated last month
- ☆25Updated 10 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 3 weeks ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- Extracts subgraphs or components from a graph in GFA format☆23Updated 7 months ago
- Differential k-mer analysis☆36Updated last year
- Genome Assembly 102☆14Updated 2 months ago
- Infering ancestral synteny with hierarchical orthologous groups☆16Updated 2 weeks ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 7 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- ☆16Updated 3 weeks ago
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- Consensus genome annotation using OMA☆26Updated 3 weeks ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Reference bias measuring toolkit☆18Updated 2 months ago
- ☆20Updated last year
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 3 months ago
- ☆20Updated this week
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Prefix-renaming FASTA records really fast.☆17Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Pangenome Mutation-Annotated Networks☆15Updated this week
- ☆24Updated 7 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 4 months ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year