Better Alignments with Translated HMMER
☆26Jun 15, 2026Updated 2 weeks ago
Alternatives and similar repositories for BATH
Users that are interested in BATH are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 5 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 8 months ago
- ☆18Jan 29, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated last year
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 10 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆36Jun 4, 2026Updated 3 weeks ago
- ☆21Dec 13, 2024Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 8 months ago
- long-read depth breaking☆11Apr 19, 2018Updated 8 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jun 3, 2026Updated 3 weeks ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- ☆39Feb 22, 2023Updated 3 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- ☆11Apr 20, 2018Updated 8 years ago
- Nail is an Alignment Inference tooL☆62May 14, 2026Updated last month
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- ☆135Aug 29, 2024Updated last year
- Infering ancestral synteny with hierarchical orthologous groups☆38Oct 17, 2025Updated 8 months ago
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Learning and Aligning Large Protein Families with support of protein language models.☆32Updated this week
- A method for measuring chromosome-specific telomere length from long reads☆22May 20, 2024Updated 2 years ago
- Identification of transposable element families from pangenome polymorphisms☆56Jun 8, 2026Updated 3 weeks ago
- Evaluating genome assemblies☆122Mar 3, 2026Updated 3 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated last year
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- ⛓ Correct misassemblies using linked AND long reads☆64Mar 24, 2026Updated 3 months ago
- Software package for estimating fine-scale recombination rate.☆18Jun 8, 2021Updated 5 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Domain based annotation of transposable elements☆23Oct 8, 2025Updated 8 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆24Jun 26, 2024Updated 2 years ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆92Apr 16, 2026Updated 2 months ago
- Complete assemblies of non-human primate genomes☆61May 20, 2025Updated last year
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Mar 11, 2024Updated 2 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆28May 7, 2026Updated last month
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated last year