ChaissonLab / TT-MarsLinks
Structural Variants Assessment Based on Haplotype-resolved Assemblies
☆21Updated 2 years ago
Alternatives and similar repositories for TT-Mars
Users that are interested in TT-Mars are comparing it to the libraries listed below
Sorting:
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- De novo tandem repeat calling from PacBio HiFi data☆18Updated 5 months ago
- Tandem repeat genotyping with long reads☆32Updated 2 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- ☆16Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆32Updated last month
- Kmer Analysis of Pileups for Genotyping☆33Updated last week
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- ☆18Updated last year
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- SV calling for diploid assemblies☆29Updated last year
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆29Updated 5 months ago
- ☆21Updated 9 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆26Updated 3 weeks ago
- ☆16Updated 2 years ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆13Updated 3 months ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Convert HAL to VG☆23Updated last year
- ☆31Updated 6 years ago
- ☆38Updated last month
- Population-wide Deletion Calling☆35Updated 7 months ago