ChaissonLab / TT-MarsLinks
Structural Variants Assessment Based on Haplotype-resolved Assemblies
☆21Updated 2 years ago
Alternatives and similar repositories for TT-Mars
Users that are interested in TT-Mars are comparing it to the libraries listed below
Sorting:
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- SV calling for diploid assemblies☆27Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- convert PAF format to CHAIN format☆30Updated last month
- ☆14Updated last year
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last month
- ☆30Updated 5 years ago
- De novo tandem repeat calling from PacBio HiFi data☆17Updated 2 weeks ago
- Kmer Analysis of Pileups for Genotyping☆30Updated this week
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ☆16Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Convert HAL to VG☆22Updated 10 months ago
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- Very simple and configurable all-in-one dotplot program