Structural Variants Assessment Based on Haplotype-resolved Assemblies
☆21Apr 28, 2023Updated 2 years ago
Alternatives and similar repositories for TT-Mars
Users that are interested in TT-Mars are comparing it to the libraries listed below
Sorting:
- Copy number caller for long read data including SNV utilization☆70Mar 31, 2025Updated 11 months ago
- Jasmine: SV Merging Across Samples☆243Dec 20, 2024Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 8 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Apr 9, 2022Updated 3 years ago
- Kmer Analysis of Pileups for Genotyping☆37Mar 6, 2026Updated 2 weeks ago
- ☆16Jan 10, 2022Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆30Jun 18, 2025Updated 9 months ago
- ☆14Oct 17, 2024Updated last year
- VNTR annotation using motif selection☆40Updated this week
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Feb 21, 2026Updated 3 weeks ago
- SV calling for diploid assemblies☆31Mar 22, 2024Updated last year
- Phased assembly variant caller☆135Dec 4, 2024Updated last year
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- Tumor-normal variant calling workflow using HiFi reads☆28Mar 4, 2026Updated 2 weeks ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Nov 28, 2025Updated 3 months ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 7 months ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated last year
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆124Mar 10, 2026Updated last week
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆71Mar 10, 2026Updated last week
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 5 years ago
- Complex structural variant detection from WGS data☆31Jan 10, 2025Updated last year
- ☆101Apr 22, 2024Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆49Jun 2, 2020Updated 5 years ago
- Structural variant toolkit for VCFs☆399Mar 8, 2026Updated last week
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- ATaRVa - Analysis of Tandem Repeat Variation☆17Updated this week
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆35Oct 27, 2025Updated 4 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Sep 19, 2022Updated 3 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- ☆44Sep 10, 2024Updated last year
- Basecalling configuration prediction through FASTQ files☆33Updated this week
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆54Mar 5, 2025Updated last year
- GBWT-based handle graph☆31Updated this week
- ☆84Mar 3, 2025Updated last year
- ☆31Feb 14, 2026Updated last month