ChaissonLab / TT-MarsLinks
Structural Variants Assessment Based on Haplotype-resolved Assemblies
☆21Updated 2 years ago
Alternatives and similar repositories for TT-Mars
Users that are interested in TT-Mars are comparing it to the libraries listed below
Sorting:
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Kmer Analysis of Pileups for Genotyping☆32Updated this week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- ☆31Updated 5 years ago
- ☆16Updated 3 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- SV calling for diploid assemblies☆28Updated last year
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- ☆16Updated 2 years ago
- ☆21Updated 7 months ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Updated 2 months ago
- Tandem repeat genotyping with long reads☆30Updated 2 weeks ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 10 months ago
- De novo tandem repeat calling from PacBio HiFi data☆17Updated 4 months ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆11Updated last month
- ☆38Updated this week
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- ☆18Updated last year
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆33Updated last year
- Phasing reads with secondary alignments☆20Updated 10 months ago