Structural Variants Assessment Based on Haplotype-resolved Assemblies
☆21Apr 28, 2023Updated 3 years ago
Alternatives and similar repositories for TT-Mars
Users that are interested in TT-Mars are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Copy number caller for long read data including SNV utilization☆70Mar 31, 2025Updated last year
- Jasmine: SV Merging Across Samples☆259Dec 20, 2024Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated last year
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆14Apr 9, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated last month
- ☆16Jan 10, 2022Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆32Jun 18, 2025Updated last year
- VNTR annotation using motif selection☆44May 25, 2026Updated 3 months ago
- ☆14Oct 17, 2024Updated last year
- Tumor-normal variant calling workflow using HiFi reads☆31Mar 4, 2026Updated 5 months ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Phased assembly variant caller☆142Dec 4, 2024Updated last year
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18May 4, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated last month
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆41May 19, 2026Updated 3 months ago
- Complex structural variant detection from WGS data☆31Jan 10, 2025Updated last year
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆127Apr 17, 2026Updated 4 months ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆49Jun 2, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆102Apr 22, 2024Updated 2 years ago
- Structural variant toolkit for VCFs☆422May 22, 2026Updated 3 months ago
- assembly evaluation tool☆35May 11, 2022Updated 4 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆31Sep 19, 2022Updated 3 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 10 months ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- ☆45Jul 16, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆86Aug 20, 2026Updated last week
- A versatile compressor of third generation sequencing reads.☆53Mar 24, 2024Updated 2 years ago
- GBWT-based handle graph☆35Aug 19, 2026Updated last week
- ☆85Mar 3, 2025Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆38Oct 14, 2025Updated 10 months ago
- ☆23Aug 8, 2022Updated 4 years ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆117Apr 9, 2025Updated last year