Alternatives and similar repositories for TT-Mars:

Users that are interested in TT-Mars are comparing it to the libraries listed below

• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆24Updated 10 months ago
• PacificBiosciences / trgt-denovo
  De novo tandem repeat calling from PacBio HiFi data
  ☆15Updated 2 weeks ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆18Updated 6 months ago
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆25Updated 2 months ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆26Updated 2 years ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated last year
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 2 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 8 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆26Updated 5 months ago
• PacificBiosciences / HiFi-somatic-WDL
  Tumor-normal variant calling workflow using HiFi reads
  ☆15Updated this week
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• mrvollger / NucFreq
  ☆35Updated 11 months ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆21Updated last week
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆14Updated 2 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆31Updated last month
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated last year
• ndierckx / combiSV
  Combine structural variation outputs from long sequencing reads into a superior call set
  ☆13Updated 8 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 3 years ago
• human-pangenomics / hprc-tutorials
  ☆14Updated 10 months ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆21Updated 6 months ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆22Updated last week
• ptrebert / project-diploid-assembly
  Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
  ☆15Updated 10 months ago
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆21Updated last week
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• gymrek-lab / LongTR
  Tandem repeat genotyping with long reads
  ☆28Updated 2 weeks ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• jts / mbtools
  ☆13Updated last year