Alternatives and similar repositories for TT-Mars

Users that are interested in TT-Mars are comparing it to the libraries listed below

• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 4 years ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆23Updated 5 months ago
• jmonlong / parakit
  Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.
  ☆13Updated 3 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆33Updated 4 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆28Updated last year
• jts / mbtools
  ☆14Updated 2 years ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 3 years ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆14Updated 2 years ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆35Updated 2 weeks ago
• yangao07 / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆33Updated last year
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆22Updated last year
• gymrek-lab / LongTR
  Tandem repeat genotyping with long reads
  ☆33Updated 2 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated last year
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 5 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆23Updated last year
• AndreaGuarracino / 1000G-ONT-F100-PGGB
  PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium
  ☆12Updated 8 months ago
• hitbc / gcSV
  ☆21Updated 9 months ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆29Updated 4 years ago
• UCSC-nanopore-cgl / margin
  ☆33Updated 3 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated last month
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆29Updated last year
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated 3 weeks ago
• PacificBiosciences / trgt-denovo
  De novo tandem repeat calling from PacBio HiFi data
  ☆19Updated 2 weeks ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆25Updated 4 years ago
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆38Updated 7 months ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆30Updated last year
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 8 months ago