ChaissonLab / TT-Mars
Structural Variants Assessment Based on Haplotype-resolved Assemblies
☆21Updated last year
Alternatives and similar repositories for TT-Mars:
Users that are interested in TT-Mars are comparing it to the libraries listed below
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 6 months ago
- De novo tandem repeat calling from PacBio HiFi data☆15Updated 3 months ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- SV calling for diploid assemblies☆23Updated 9 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 5 months ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- ☆35Updated 10 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆36Updated this week
- Tumor-normal variant calling workflow using HiFi reads☆13Updated 2 weeks ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆43Updated 6 months ago
- ☆13Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆24Updated 3 weeks ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- ☆31Updated 5 years ago
- Variant annotation and merging pipeline☆31Updated last week
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆39Updated 2 months ago
- Kmer Analysis of Pileups for Genotyping☆21Updated 2 weeks ago
- ☆27Updated 5 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 3 months ago
- Structural variant (SV) analysis tools☆35Updated 6 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆34Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆25Updated 2 months ago
- WDL workflows for variant calling and assembly using ONT☆30Updated 3 weeks ago
- A battery of methylation tools for PacBio HiFi reads☆29Updated last month
- Phasing reads with secondary alignments☆17Updated last month