ChaissonLab / TT-Mars
Structural Variants Assessment Based on Haplotype-resolved Assemblies
☆21Updated 2 years ago
Alternatives and similar repositories for TT-Mars
Users that are interested in TT-Mars are comparing it to the libraries listed below
Sorting:
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- De novo tandem repeat calling from PacBio HiFi data☆16Updated 3 months ago
- SV calling for diploid assemblies☆27Updated last year
- Kmer Analysis of Pileups for Genotyping☆29Updated last month
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 2 weeks ago
- ☆20Updated 2 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- convert PAF format to CHAIN format☆29Updated 5 months ago
- Very simple and configurable all-in-one dotplot program☆12Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆15Updated 11 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Phasing reads with secondary alignments☆18Updated 5 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 5 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆20Updated 9 months ago
- Variant annotation and merging pipeline☆34Updated last month
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- ☆14Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 10 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆17Updated last year
- ☆30Updated 5 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 11 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆29Updated 11 months ago
- Convert HAL to VG☆22Updated 9 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- ☆30Updated 2 years ago
- Tumor-normal variant calling workflow using HiFi reads☆19Updated last week