ChaissonLab / TT-MarsLinks
Structural Variants Assessment Based on Haplotype-resolved Assemblies
☆21Updated 2 years ago
Alternatives and similar repositories for TT-Mars
Users that are interested in TT-Mars are comparing it to the libraries listed below
Sorting:
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- ☆16Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- Tandem repeat genotyping with long reads☆35Updated 4 months ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 7 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- SV calling for diploid assemblies☆30Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Kmer Analysis of Pileups for Genotyping☆35Updated last week
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- ☆19Updated last year
- ☆14Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆30Updated 4 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 5 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Updated 6 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 4 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆13Updated 5 months ago
- ☆16Updated 4 years ago
- ☆31Updated 6 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- Convert HAL to VG☆23Updated last year
- This is the Haplotypo repository☆22Updated last year
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Updated 10 months ago
- De novo tandem repeat calling from PacBio HiFi data☆19Updated 2 months ago