Gabaldonlab / jlohLinks
A tool to extract LOH blocks from VCF, BAM and FASTA data
☆23Updated 10 months ago
Alternatives and similar repositories for jloh
Users that are interested in jloh are comparing it to the libraries listed below
Sorting:
- Structural variant (SV) analysis tools☆36Updated last year
- Population-wide Deletion Calling☆35Updated 3 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 2 weeks ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 3 weeks ago
- ☆16Updated 6 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- ☆31Updated 2 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆20Updated 4 months ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- ☆14Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- A tutorial on structural variant calling for short read sequencing data☆39Updated 8 months ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- This is the Haplotypo repository☆20Updated last year