Gabaldonlab / jlohLinks
A tool to extract LOH blocks from VCF, BAM and FASTA data
☆23Updated last year
Alternatives and similar repositories for jloh
Users that are interested in jloh are comparing it to the libraries listed below
Sorting:
- A long-read analysis toolbox for cancer and population genomics☆23Updated last month
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Tools for merging Tandem Repeat VCF files☆33Updated 4 months ago
- Structural variant (SV) analysis tools☆36Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 5 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 8 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- Sample Contamination Estimate from VCF☆20Updated 9 months ago
- ☆31Updated 3 years ago
- ☆28Updated 2 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆43Updated 10 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Structural variant caller for low-depth long-read sequencing data☆46Updated 2 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆30Updated 4 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago