zhaotao1987 / SynNet-Pipeline
Workflow for Building Microsynteny Networks
☆50Updated 2 years ago
Alternatives and similar repositories for SynNet-Pipeline:
Users that are interested in SynNet-Pipeline are comparing it to the libraries listed below
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆18Updated 2 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆109Updated last month
- NLR-Annotator upload☆63Updated last year
- collection of bioinformatic scripts☆30Updated 9 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- Some bioinformic domestic scripts.☆34Updated 2 years ago
- ☆73Updated 7 months ago
- ☆26Updated 2 months ago
- NLR annotation tool☆23Updated 11 months ago
- This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Updated 6 years ago
- Scripting analyses of genomes in Ensembl Plants☆38Updated 2 weeks ago
- Genomic related tools☆71Updated 3 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆52Updated this week
- A novel genome assembly pipeline based on deep learning☆59Updated 2 months ago
- Neural network classification of TE☆87Updated 2 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆50Updated 2 weeks ago
- convert various features into a GFF-like file for use in genome browsers☆69Updated last year
- Genome annotation pipeline☆56Updated 7 months ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated last year
- Best practices and workflow for genome annotation☆73Updated last week
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆48Updated 4 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆115Updated 4 years ago
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆80Updated 4 years ago
- source code for EVM☆106Updated 2 months ago
- TransposonUltimate - a holistic set of tools for transposon identification☆83Updated 2 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆48Updated 2 months ago
- A practical guide to build de-novo transcriptome assemblies for non-model organisms (described in Montero-Mendieta et al. 2017).☆27Updated 7 years ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆60Updated 4 months ago
- Algorithm For Gene Order Reconstruction in Ancestors☆72Updated 3 months ago
- a tool for inferring species tree from sequencing reads☆146Updated last week