Alternatives and similar repositories for orthologr

Users that are interested in orthologr are comparing it to the libraries listed below

• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆77Updated last month
• Russel88 / DAtest
  Compare different differential abundance and expression methods
  ☆52Updated 3 years ago
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆101Updated 5 months ago
• davidebolo1993 / NanoR
  Nanopore data analysis in R
  ☆40Updated 2 years ago
• josephhughes / Sequence-manipulation
  A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats
  ☆30Updated last year
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆79Updated this week
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆54Updated 2 months ago
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated last year
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆41Updated last year
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆45Updated this week
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆48Updated last year
• RAHenriksen / NGSNGS
  NGSNGS: Next generation simulator for next generation sequencing data
  ☆54Updated 9 months ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆72Updated 3 years ago
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 3 years ago
• najoshi / sabre
  ☆63Updated 4 years ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆54Updated 3 years ago
• MVesuviusC / primerTree
  PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs
  ☆52Updated last year
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆69Updated 8 months ago
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆67Updated last week
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆63Updated 11 months ago
• knights-lab / BugBase
  ☆41Updated 7 years ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• mahsa-mousavi / eDNAFlow
  ☆21Updated 2 years ago
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆87Updated last month
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• arendsee / phylostratr
  An R framework for phylostratigraphy
  ☆32Updated 3 weeks ago
• larssnip / micropan
  R package for microbial pangenomics
  ☆24Updated 3 years ago
• rdpstaff / classifier
  RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
  ☆58Updated 2 years ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆69Updated last year