popgenome / lettuce2020
Codes for the lettuce resequencing project in 2020
☆28Updated 3 years ago
Alternatives and similar repositories for lettuce2020:
Users that are interested in lettuce2020 are comparing it to the libraries listed below
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆37Updated 5 months ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆35Updated 2 weeks ago
- ☆17Updated 2 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆16Updated 4 months ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆16Updated last year
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 2 months ago
- A tool for performing collinearity-incorporating homology inference☆28Updated last year
- Scripts to convert between file formats for various analyses☆15Updated last week
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 3 years ago
- ☆38Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- A haplotype analysis toolkit for natural variation study.☆29Updated last year
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆38Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆41Updated 5 years ago
- Analyses of sex chromosome evolution in songbirds☆15Updated 5 years ago
- Scripts and resources for the haploblocks manuscript☆15Updated 4 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆44Updated 9 months ago
- Dynamic Elongation of a Genome Assembly Path☆20Updated 9 months ago
- ☆28Updated 5 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆25Updated 6 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆34Updated 3 weeks ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆19Updated last year
- De novo annotation of young retrotransposons☆47Updated 2 years ago
- This is a method to find telomeres and centromeres in plants.☆37Updated last year