simonwhelan / prequal
PREQUAL: a pre-alignment quality filter for comparative sequence analyses
☆31Updated 2 years ago
Alternatives and similar repositories for prequal:
Users that are interested in prequal are comparing it to the libraries listed below
- ☆21Updated 10 years ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆35Updated 9 months ago
- STAG: Species Tree from All Genes☆33Updated 6 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆13Updated 2 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆14Updated 3 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- ☆43Updated 9 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- ☆32Updated 4 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated last week
- a broadly applicable tool for automated gene identification and retrieval☆30Updated last month
- Within-species genome-wide dN/dS estimation from very many genomes☆19Updated 4 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 7 months ago
- ☆26Updated 3 years ago
- ASTRAL for PaRalogs and Orthologs☆21Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- ContScout sequence contamination filter tool☆19Updated 2 weeks ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆21Updated this week
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 3 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆21Updated 2 years ago
- ☆10Updated 11 months ago
- Automatic evaluation of HGTs☆26Updated last month
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆30Updated last year