simonwhelan / prequal
PREQUAL: a pre-alignment quality filter for comparative sequence analyses
☆31Updated 2 years ago
Alternatives and similar repositories for prequal
Users that are interested in prequal are comparing it to the libraries listed below
Sorting:
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 5 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆15Updated 2 weeks ago
- ☆22Updated 11 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Multi-genome synteny block visualization tool☆37Updated 3 months ago
- ☆32Updated 4 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- Tool for fully-automated inference of species trees from raw genome assemblies☆32Updated last week
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 11 months ago
- ASTRAL for PaRalogs and Orthologs☆21Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 3 months ago
- ContScout sequence contamination filter tool☆20Updated 4 months ago
- Computational Analysis of Gene Expression Evolution☆40Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 3 weeks ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- orthology assignment using phylogenetic and network analyses☆45Updated 2 months ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆21Updated 2 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 3 months ago
- Within-species genome-wide dN/dS estimation from very many genomes☆20Updated 4 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆26Updated 4 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆22Updated 3 years ago
- ☆43Updated last year
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 2 months ago