Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
☆21Sep 18, 2019Updated 7 years ago
Alternatives and similar repositories for BuscoOrthoPhylo
Users that are interested in BuscoOrthoPhylo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is code for running Orthofinder -> PAML☆14Jul 27, 2016Updated 10 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- ☆25Feb 24, 2026Updated 8 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- ☆27Jun 27, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆20Apr 24, 2022Updated 4 years ago
- ☆25Mar 17, 2026Updated 7 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆18Oct 6, 2025Updated last year
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆24May 19, 2020Updated 6 years ago
- A tool for evaluating long-read de novo assembly results☆55Aug 25, 2024Updated 2 years ago
- ☆11Oct 23, 2024Updated 2 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Sep 25, 2026Updated last month
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆20Oct 14, 2020Updated 6 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Updated this week
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- A Swiss-Army-Knife for Bioinformaticians☆15Jul 26, 2026Updated 3 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes☆13Sep 12, 2026Updated last month
- Analyses pipelines that I use for my work☆12Jul 7, 2021Updated 5 years ago
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 8 years ago
- ☆15Aug 6, 2025Updated last year
- ☆83Jun 2, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- Phylogenomic species tree inference under gene duplication and loss☆13Sep 20, 2026Updated last month
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 8 years ago
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆18Jan 3, 2026Updated 10 months ago
- ☆21Oct 21, 2024Updated 2 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆43Oct 31, 2026Updated last week
- Phylogenomics from Low-coverage Whole-genome Sequencing☆43Aug 21, 2020Updated 6 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆16Oct 19, 2026Updated 2 weeks ago
- Quartet-based estimation of species trees, trees of blobs, and level-1 networks☆16Sep 22, 2026Updated last month
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 11 months ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆87Jan 6, 2026Updated 10 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- Chromosome-level synteny plotting using orthologous regions☆33Sep 19, 2024Updated 2 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago