PlantDr430 / BuscoOrthoPhylo
Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
☆20Updated 5 years ago
Alternatives and similar repositories for BuscoOrthoPhylo:
Users that are interested in BuscoOrthoPhylo are comparing it to the libraries listed below
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 6 months ago
- Yet another Hi-C scaffolding tool☆19Updated 5 months ago
- ☆27Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- Genome Annotation Pipeline☆35Updated 7 months ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆16Updated 4 years ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆28Updated 3 months ago
- Multi-genome synteny block visualization tool☆32Updated 2 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- Diploid genome assembly analysis tools☆14Updated 6 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- ☆29Updated last week
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated last month
- Automatic evaluation of HGTs☆27Updated last month
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆23Updated 2 weeks ago
- Plant genome assembly and annotation pipeline using snakemake☆42Updated last year
- ☆32Updated 4 months ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 6 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated last month
- ContScout sequence contamination filter tool☆20Updated 2 months ago
- ☆27Updated last year
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 9 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated 2 months ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆18Updated last year
- Domain based annotation of transposable elements☆19Updated last month
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago