PlantDr430 / BuscoOrthoPhyloLinks
Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
☆20Updated 6 years ago
Alternatives and similar repositories for BuscoOrthoPhylo
Users that are interested in BuscoOrthoPhylo are comparing it to the libraries listed below
Sorting:
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- ☆28Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆31Updated last month
- ☆26Updated 4 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆18Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆40Updated 4 months ago
- Yet another Hi-C scaffolding tool☆22Updated 11 months ago
- Infering ancestral synteny with hierarchical orthologous groups☆31Updated last week
- Chromosome-level synteny plotting using orthologous regions☆29Updated last year
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆20Updated 5 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- An R package to infer and analyze synteny networks from protein sequences☆32Updated 2 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated 3 weeks ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆28Updated 4 months ago
- Genome alignment and synteny plots☆32Updated 2 years ago
- Genome Annotation Pipeline☆36Updated last year
- Multi-genome synteny block visualization tool☆47Updated 8 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- ☆33Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 10 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last month